peptides.h File Reference

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Classes

class  BALL::Peptides::NameConverter
 

This class provides conversion of atom names between naming schemata.

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struct  BALL::Peptides::NameConverter::Option
 

Option names.

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struct  BALL::Peptides::NameConverter::Default
 

Default values for options.

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Namespaces

namespace  BALL
namespace  BALL::Peptides

Typedefs

Type definitions
typedef std::list< String > BALL::Peptides::ThreeLetterAASequence
 

An amino acid sequence in three-letter code.


typedef String BALL::Peptides::OneLetterAASequence
 

An amino acid sequence in one-letter code.



Functions

Amino acid sequence conversion
BALL_EXPORT char BALL::Peptides::OneLetterCode (const String &aa)
BALL_EXPORT String BALL::Peptides::ThreeLetterCode (char aa)
BALL_EXPORT bool BALL::Peptides::IsOneLetterCode (char aa)
BALL_EXPORT bool BALL::Peptides::IsThreeLetterCode (const String &aa)
BALL_EXPORT OneLetterAASequence BALL::Peptides::ThreeLetterToOneLetter (const ThreeLetterAASequence &sequence)
BALL_EXPORT ThreeLetterAASequence BALL::Peptides::OneLetterToThreeLetter (const OneLetterAASequence &sequence)
BALL_EXPORT OneLetterAASequence BALL::Peptides::GetSequence (const Protein &protein)
BALL_EXPORT OneLetterAASequence BALL::Peptides::GetSequence (const Chain &chain)
BALL_EXPORT OneLetterAASequence BALL::Peptides::GetSequence (ResidueConstIterator it)

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