BALL::DNAMutator Member List
This is the complete list of members for
BALL::DNAMutator, including all inherited members.
| ADENINE enum value | BALL::DNAMutator | |
| Base enum name | BALL::DNAMutator | |
| bases_ | BALL::DNAMutator | [private, static] |
| CYTOSINE enum value | BALL::DNAMutator | |
| db_ | BALL::DNAMutator | [private] |
| default_num_steps_ | BALL::DNAMutator | [private, static] |
| DNAMutator(EnergyMinimizer *mini=NULL, ForceField *ff=NULL, FragmentDB *frag=NULL) | BALL::DNAMutator | |
| ff_ | BALL::DNAMutator | [private] |
| freeDB_() | BALL::DNAMutator | [private] |
| freeFF_() | BALL::DNAMutator | [private] |
| getAttachmentAtom(AtomContainer *res) | BALL::DNAMutator | [private] |
| getConnectionAtom(Atom *at) | BALL::DNAMutator | [private] |
| getNormalVector(const Atom *at) | BALL::DNAMutator | [private] |
| getOrthogonalVector(const Vector3 &n, const Atom *base, const Atom *at) | BALL::DNAMutator | [private] |
| getSecondNitro(const std::vector< const Atom * > &ring_atoms, const Atom *base) | BALL::DNAMutator | [private] |
| GUANINE enum value | BALL::DNAMutator | |
| isPurine(const Atom &baseNitrogen) const | BALL::DNAMutator | [private] |
| isPyrimidine(const Atom &baseNitrogen) const | BALL::DNAMutator | [private] |
| keep_db_ | BALL::DNAMutator | [private] |
| keep_ff_ | BALL::DNAMutator | [private] |
| mark_(AtomContainer *atoms) | BALL::DNAMutator | [private] |
| markBaseAtoms(AtomContainer *res) | BALL::DNAMutator | [private] |
| minimizer_ | BALL::DNAMutator | [private] |
| mutate(Fragment *res, Base base) | BALL::DNAMutator | |
| num_steps_ | BALL::DNAMutator | [private] |
| optimize_(Fragment *frag) | BALL::DNAMutator | [private] |
| prop_ | BALL::DNAMutator | [private] |
| rotateBases(AtomContainer *from, const Atom *from_at, const Atom *to_at, const Vector3 &from_connection, const Vector3 &to_connection) | BALL::DNAMutator | [private] |
| rotateSameBases(AtomContainer *from, AtomContainer *to) | BALL::DNAMutator | [private] |
| setForceField(ForceField *ff) | BALL::DNAMutator | |
| setFragmentDB(FragmentDB *frag) | BALL::DNAMutator | |
| setMaxOptimizationSteps(Size steps) | BALL::DNAMutator | |
| setMinimizer(EnergyMinimizer *mini) | BALL::DNAMutator | |
| setup() | BALL::DNAMutator | |
| setUsedProperty(Property p) | BALL::DNAMutator | |
| THYMINE enum value | BALL::DNAMutator | |
| tryFlip_(Fragment *res, const Vector3 &connect_atom, const Vector3 &axis) const | BALL::DNAMutator | [private] |
| unmark_(AtomContainer *atoms) | BALL::DNAMutator | [private] |
| URACILE enum value | BALL::DNAMutator | |
| ~DNAMutator() | BALL::DNAMutator | |