BALL::FragmentDB Member List

This is the complete list of members for BALL::FragmentDB, including all inherited members.

add_hydrogens	BALL::FragmentDB
addNewFragment_(Residue *fragment)	BALL::FragmentDB	[private]
build_bonds	BALL::FragmentDB
default_standard_	BALL::FragmentDB	[private]
destroy()	BALL::FragmentDB
expandFirst_(ResourceEntry &root_entry)	BALL::FragmentDB	[private]
expandTree_(ResourceEntry &root_entry)	BALL::FragmentDB	[private]
filename_	BALL::FragmentDB	[private]
FragmentDB()	BALL::FragmentDB
FragmentDB(const String &filename)	BALL::FragmentDB
FragmentDB(const FragmentDB &db, bool deep=true)	BALL::FragmentDB
FragmentDB::AddHydrogensProcessor class	BALL::FragmentDB	[friend]
fragments_	BALL::FragmentDB	[private]
FragmentTypes enum name	BALL::FragmentDB
getAvailableNamingStandards() const	BALL::FragmentDB
getDefaultNamingStandard() const	BALL::FragmentDB
getFilename() const	BALL::FragmentDB
getFragment(const String &fragment_name) const	BALL::FragmentDB
getFragmentCopy(const String &fragment_name) const	BALL::FragmentDB
getFragments()	BALL::FragmentDB	[inline]
getFragmentType(const String &fragment_name) const	BALL::FragmentDB
getMoleculeCopy(const String &fragment_name) const	BALL::FragmentDB
getNamingStandard(const String &std) const	BALL::FragmentDB
getNamingStandards()	BALL::FragmentDB
getReferenceFragment(const Fragment &fragment) const	BALL::FragmentDB
getResidue(const String &fragment_name) const	BALL::FragmentDB
getResidueCopy(const String &fragment_name) const	BALL::FragmentDB
getVariantNames(const String &name) const	BALL::FragmentDB
has(const String &fragment_name) const	BALL::FragmentDB
init()	BALL::FragmentDB
isValid() const	BALL::FragmentDB
name_to_frag_index_	BALL::FragmentDB	[private]
name_to_path_	BALL::FragmentDB	[private]
name_to_variants_	BALL::FragmentDB	[private]
NameMap typedef	BALL::FragmentDB
normalize_names	BALL::FragmentDB
operator=(const FragmentDB &db)	BALL::FragmentDB
parseAtoms_(ResourceEntry &entry, Fragment &fragment)	BALL::FragmentDB	[private]
parseBonds_(ResourceEntry &entry, Fragment &fragment)	BALL::FragmentDB	[private]
parseDelete_(ResourceEntry &entry, Fragment &fragment)	BALL::FragmentDB	[private]
parseProperties_(ResourceEntry &entry, PropertyManager &property_man)	BALL::FragmentDB	[private]
parseRename_(ResourceEntry &entry, Fragment &fragment)	BALL::FragmentDB	[private]
setFilename(const String &filename)	BALL::FragmentDB
standards_	BALL::FragmentDB	[private]
tree	BALL::FragmentDB
Type typedef	BALL::FragmentDB
TYPE__FRAGMENT enum value	BALL::FragmentDB
TYPE__MOLECULE enum value	BALL::FragmentDB
TYPE__RESIDUE enum value	BALL::FragmentDB
TYPE__UNKNOWN enum value	BALL::FragmentDB
valid_	BALL::FragmentDB	[private]
~FragmentDB()	BALL::FragmentDB	[virtual]