BALL::FragmentDB::NormalizeNamesProcessor Member List

This is the complete list of members for BALL::FragmentDB::NormalizeNamesProcessor, including all inherited members.
ADD enum valueBALL::FragmentDB::NormalizeNamesProcessor [private]
argument_pointer typedefBALL::UnaryFunctor< Fragment, Processor::Result >
argument_reference typedefBALL::UnaryFunctor< Fragment, Processor::Result >
argument_type typedefBALL::UnaryFunctor< Fragment, Processor::Result >
const_argument_pointer typedefBALL::UnaryFunctor< Fragment, Processor::Result >
const_argument_reference typedefBALL::UnaryFunctor< Fragment, Processor::Result >
countHits_(HashMap< NameMap *, Index > &maps, const std::list< Fragment * > &frags)BALL::FragmentDB::NormalizeNamesProcessor [private]
countHits_(HashMap< NameMap *, Index > &maps, const Fragment *frag, CountingMode mode=OVERWRITE)BALL::FragmentDB::NormalizeNamesProcessor [private]
CountingMode enum nameBALL::FragmentDB::NormalizeNamesProcessor [private]
doMatch_(String &res_name, const String &res_name_suffix, String &atom_name, const NameMap &map) const BALL::FragmentDB::NormalizeNamesProcessor [private]
finish()BALL::FragmentDB::NormalizeNamesProcessor [virtual]
fragment_db_BALL::FragmentDB::NormalizeNamesProcessor [private]
fragments_BALL::FragmentDB::NormalizeNamesProcessor [private]
getBestMap_(const HashMap< NameMap *, Index > &maps) const BALL::FragmentDB::NormalizeNamesProcessor [private]
getNamingStandard()BALL::FragmentDB::NormalizeNamesProcessor
getSuffix_(const Fragment *frag) const BALL::FragmentDB::NormalizeNamesProcessor [private]
matchName(String &res_name, String &atom_name, const NameMap &map) const BALL::FragmentDB::NormalizeNamesProcessor
naming_standard_BALL::FragmentDB::NormalizeNamesProcessor [private]
normalizeFragment_(const NameMap *map, Fragment *frag)BALL::FragmentDB::NormalizeNamesProcessor [private]
normalizeFragments_(const NameMap *map, const std::list< Fragment * > &frags)BALL::FragmentDB::NormalizeNamesProcessor [private]
NormalizeNamesProcessor()BALL::FragmentDB::NormalizeNamesProcessor
NormalizeNamesProcessor(FragmentDB &db)BALL::FragmentDB::NormalizeNamesProcessor
operator()(Fragment &fragment)BALL::FragmentDB::NormalizeNamesProcessor [virtual]
OVERWRITE enum valueBALL::FragmentDB::NormalizeNamesProcessor [private]
result_type typedefBALL::UnaryFunctor< Fragment, Processor::Result >
setFragmentDB(FragmentDB &db)BALL::FragmentDB::NormalizeNamesProcessor
setNamingStandard(const String &naming_standard)BALL::FragmentDB::NormalizeNamesProcessor
start()BALL::FragmentDB::NormalizeNamesProcessor [virtual]
UnaryProcessor()BALL::UnaryProcessor< Fragment > [inline]
UnaryProcessor(const UnaryProcessor &)BALL::UnaryProcessor< Fragment > [inline]
~NormalizeNamesProcessor()BALL::FragmentDB::NormalizeNamesProcessor [virtual]
~UnaryProcessor()BALL::UnaryProcessor< Fragment > [inline, virtual]