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S BALL::Element
s1d_ BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
s2d_ BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
salt_bridge_atom BALL::PDB::RecordCONECT
SAMARIUM BALL::Element
same_energy_counter_ BALL::EnergyMinimizer
Sample BALL::NMRStarFile::Sample
Sample BALL::NMRStarFile
sample_conditions_ BALL::NMRStarFile
sample_positions_ BALL::CubicSpline1D
sample_positions_x_ BALL::CubicSpline2D
sample_positions_y_ BALL::CubicSpline2D
SampleCondition BALL::NMRStarFile::SampleCondition
SampleCondition BALL::NMRStarFile
samples_ BALL::NMRStarFile
sas_ BALL::TriangulatedSAS
SAS_grid BALL::FDPB
SASEdge BALL
SASFace BALL
SASVertex BALL
saturateWithHydrogens BALL::VIEW::EditableScene
saturation_ BALL::VIEW::ColorHSV
save_ BALL::ResourceFile
save_file BALL::VIEW::TestFramework
save_id_ BALL::VIEW::MolecularFileDialog
save_images_ BALL::VIEW::MDSimulationThread
save_project_action_ BALL::VIEW::MainControl
saveClassInformationToFile BALL::QSAR::ClassificationModel
saved_position_ BALL::AtomVector
saveDockTrajectory BALL::VIEW::DockResultController
saveFile BALL::VIEW::TestFramework
saveframe BALL::CIFFile::Datacontent
SaveFrame BALL::CIFFile
saveframe_categories BALL::CIFFile::Datablock
saveframe_names BALL::CIFFile::Datablock
saveGAMESSInput BALL::VIEW::RunGAMESSDialog
saveKernelParametersToFile BALL::QSAR::KernelModel
saveModelParametersToFile BALL::QSAR::Model
savePositions BALL::AtomVector
saveScript BALL::VIEW::PyWidget
saveSettingsToLight_ BALL::VIEW::LightSettings
saveSettingsToStage_ BALL::VIEW::StageSettings
saveSurface BALL::VIEW::GeometricControl
saveTrainingResult BALL::QSAR::KernelModel
sb_parameters_ BALL::MMFF94StretchBend
sbmb_exists BALL::MMFF94StretchParameters::BondData
sbtijk BALL::MMFF94StretchBend::StretchBend
Sc BALL::Element
scalarProduct BALL::QSAR::Statistics
scale_ BALL::VIEW::GLRenderer
scaleVector3_ BALL::VIEW::GLRenderer
scaling_ BALL::VIEW::ForceModel
scaling_factor_ BALL::GeneralizedBornModel
scaling_factor_filename_ BALL::GeneralizedBornModel
scalingUsed BALL::VIEW::VRMLRenderer
SCANDIUM BALL::Element
Scene BALL::VIEW
SceneMessage BALL::VIEW
SceneMessageType BALL::VIEW::SceneMessage
scheduleDelete_ BALL::VIEW::PropertyEditor
scheduleDuplicate_ BALL::VIEW::PropertyEditor
scores_ BALL::DockResult::Scoring_
Scoring_ BALL::DockResult
scoring_component_ BALL::ScoringTypes
scoring_function_ BALL::ScoringComponent
scoring_opt_ BALL::VIEW::DockDialog
scoring_tolerance_ BALL::AromaticRingStacking
scoringAdvancedPressed BALL::VIEW::DockDialog
scoringClicked BALL::VIEW::DockResultDialog
scorings_ BALL::DockResult
screenshot_nr_ BALL::VIEW::Scene
script_edit_ BALL::VIEW::PyWidget
script_mode_ BALL::VIEW::PyWidget
script_output_ BALL::VIEW::PyWidget
scriptDialog BALL::VIEW::PyWidget
SCWRL_4_0 BALL::SideChainPlacementProcessor::Method
SDFile BALL
SDGenerator BALL::SDGenerator
SDWidget BALL::VIEW
sdwidget_ BALL::VIEW::AssignBondOrderResultsDialog
Se BALL::Element
searchPattern BALL::StructureMapper
searchTextChanged BALL::VIEW::ShortcutDialog
sec_axis_ BALL::CCP4File
sec_struct BALL::PDB::Structure::AtomEntry
sec_structs BALL::PDB::Structure
second_argument_pointer BALL::BinaryFunctor
second_argument_reference BALL::BinaryFunctor
second_argument_type BALL::BinaryFunctor
second_atom_expressions_ BALL::EFShiftProcessor
second_it_ BALL::BindingPocketProcessor
second_layer_rad_ BALL::BindingPocketProcessor
second_non_hydrogen_atom BALL::PDB::RecordHYDBND
second_property_ BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
SecondaryStructureColorProcessor BALL::VIEW::SecondaryStructureColorProcessor
SecondaryStructureProcessor BALL::SecondaryStructureProcessor
secs_ BALL::PreciseTime
SecStructList BALL::PDBFile
Section BALL::INIFile
section_ BALL::INIFile::IteratorTraits_
section_entries_ BALL::ParameterSection
section_index_ BALL::INIFile
section_name_ BALL::ParameterSection
SectionIterator BALL::INIFile
sections_ BALL::INIFile
seekAndWriteHeader BALL::DCDFile
select_ BALL::Composite
select_action_ BALL::VIEW::MolecularControl
select_id_ BALL::VIEW::MolecularControl
Selectable BALL
selectAllModels BALL::PDBFile
selectAtoms BALL::VIEW::GeometricControl
selectClipRepresentations BALL::VIEW::GeometricControl
selectColoringMethod BALL::VIEW::DisplayProperties
selectCompositeRecursive BALL::VIEW::MainControl
selectComposites_ BALL::VIEW::MainControl
selected_atoms_ BALL::Selector
selected_color BALL::VIEW::ModifyRepresentationDialog
selected_coloring_method_ BALL::VIEW::MolecularControl
SELECTED_COMPOSITE BALL::VIEW::CompositeMessage
SELECTED_FF BALL::VIEW::DockingController
selectedRepresentation BALL::VIEW::GeometricControl
selectFeatures BALL::QSAR::AutomaticModelCreator
SELECTION BALL::Composite
selection_color_ BALL::VIEW::ColorProcessor
selection_enabled_ BALL::ForceField
selection_name BALL::QSAR::FeatureSelectionConfiguration
selection_stamp_ BALL::Composite
selectionChanged_ BALL::VIEW::DockResultDialog
selectionPressed_ BALL::VIEW::Scene
selectionPressedMoved_ BALL::VIEW::Scene
selectItems BALL::VIEW::TreeWidget
selectMode BALL::VIEW::DisplayProperties
selectObjects_ BALL::VIEW::Scene
Selector BALL
selector_edit_ BALL::VIEW::MolecularControl
selectUnassignedForceFieldAtoms_ BALL::VIEW::MolecularStructure
SELENIUM BALL::Element
send BALL::RingPerceptionProcessor::TNode_
send_buffer BALL::RingPerceptionProcessor::TNode_
sendMessage BALL::VIEW::MainControl
sendMessage_ BALL::VIEW::BALLThread
sendObject BALL::VIEW::ServerWidget::BALLViewServer
sendOptions BALL::MPISupport
sendPersistenceStream_ BALL::MPISupport
sendSystem BALL::MPISupport
sense_of_strand BALL::PDB::RecordSHEET
separate_activity_file BALL::QSAR::InputConfiguration
SEPARATOR BALL::ResourceFile
seq_identity BALL::NMRStarFile::MonomericPolymer::HomologDB
seq_positive BALL::NMRStarFile::MonomericPolymer::HomologDB
seq_to_submitted_percentage BALL::NMRStarFile::MonomericPolymer::HomologDB
seqres_records BALL::PDB::BookKeeping
sequence_ BALL::Peptides::PeptideBuilder
sequence_database_accession_code BALL::PDB::RecordDBREF
sequence_database_ID_code BALL::PDB::RecordDBREF
sequence_database_name BALL::PDB::RecordDBREF
sequence_number_ BALL::PDBFile
SequenceControl BALL::VIEW
sequenceRing BALL::RingAnalyser
sequenceSubstituents_ BALL::SDGenerator
ser_pressed BALL::VIEW::PeptideDialog
server_ BALL::VIEW::ServerWidget
server_icon_ BALL::VIEW::ServerWidget
server_preferences_ BALL::VIEW::ServerWidget
server_status_ BALL::VIEW::ServerPreferences
serverChanged BALL::VIEW::DownloadElectronDensity
ServerPreferences BALL::VIEW::ServerPreferences
ServerPreferences BALL::VIEW
ServerWidget BALL::VIEW
SESEdge BALL
SESFace BALL
SESVertex BALL
set
BALL::Exception::GlobalExceptionHandler::set() BALL::Composite::set() BALL::PropertyManager::set() BALL::Selectable::set() BALL::PreciseTime::set(long secs, long usecs) BALL::PreciseTime::set(const PreciseTime &time) BALL::BitVector::set(const BitVector &bit_vector) BALL::BitVector::set(const char *bit_string) BALL::HashGrid3::set(const Vector3 &origin, const Vector3 &unit, Size dimension_x, Size dimension_y, Size dimension_z) BALL::HashGrid3::set(const Vector3 &origin, float unit, Size size) BALL::HashGrid3::set(const HashGrid3 &grid, bool deep=true) BALL::HashSet::set() BALL::List::set() BALL::Options::set() BALL::Quadruple::set() BALL::RegularExpression::set(const RegularExpression &regular_expression) BALL::RegularExpression::set(const String &pattern, bool wildcard_pattern=false) BALL::String::set(const String &s) BALL::String::set(const String &string, Index from, Size len=EndPos) BALL::String::set(const char *char_ptr, Index from=0, Size len=EndPos) BALL::String::set(Size buffer_size, const char *format,...) BALL::String::set(std::strstream &s) BALL::String::set(char c, Size len=1) BALL::String::set(unsigned char uc) BALL::String::set(short s) BALL::String::set(unsigned short us) BALL::String::set(int i) BALL::String::set(unsigned int ui) BALL::String::set(long l) BALL::String::set(unsigned long ul) BALL::String::set(float f) BALL::String::set(double d) BALL::Substring::set(const String &string) BALL::Substring::set(const Substring &s) BALL::Substring::set(const char *char_ptr, Size size=String::EndPos) BALL::StringHashMap::set() BALL::Triple::set() BALL::PDB::Residue::set() BALL::ResourceEntry::set() BALL::Atom::set() BALL::AtomContainer::set() BALL::Chain::set() BALL::Molecule::set() BALL::NucleicAcid::set() BALL::Nucleotide::set() BALL::PDBAtom::set() BALL::Protein::set() BALL::Residue::set() BALL::SecondaryStructure::set() BALL::System::set() BALL::TAngle::set(const T &new_value, bool radian=true) BALL::TAngle::set(const TAngle &angle) BALL::TBox3::set() BALL::TCircle3::set(const TCircle3 &circle) BALL::TCircle3::set(const TVector3< T > &point, const TVector3< T > &normal, const T &rad) BALL::TLine3::set(const TLine3 &line) BALL::TLine3::set(const TVector3< T > &point, const TVector3< T > &vector, Form form=FORM__PARAMETER) BALL::TMatrix4x4::set(const T *ptr) BALL::TMatrix4x4::set(const T ptr[4][4]) BALL::TMatrix4x4::set(const TMatrix4x4 &m) BALL::TMatrix4x4::set(const TVector4< T > &col1, const TVector4< T > &col2, const TVector4< T > &col3, const TVector4< T > &col4) BALL::TMatrix4x4::set(const T &m11, const T &m12, const T &m13, const T &m14, const T &m21, const T &m22, const T &m23, const T &m24, const T &m31, const T &m32, const T &m33, const T &m34, const T &m41, const T &m42, const T &m43, const T &m44) BALL::TMatrix4x4::set(const T &t=(T) 1) BALL::PiecewiseFunction::set() BALL::PiecewisePolynomial::set() BALL::TPlane3::set(const TPlane3 &plane) BALL::TPlane3::set(const TVector3< T > &point, const TVector3< T > &normal) BALL::TPlane3::set(const TVector3< T > &a, const TVector3< T > &b, const TVector3< T > &c) BALL::TQuaternion::set(const TQuaternion &q) BALL::TQuaternion::set(const boost::math::quaternion< T > &q) BALL::TQuaternion::set(const TVector3< T > &axis, const T &angle) BALL::TQuaternion::set(const T &w, const T &i, const T &j, const T &k) BALL::TSimpleBox3::set(const TSimpleBox3 &box) BALL::TSimpleBox3::set(const TVector3< T > &lower, const TVector3< T > &upper) BALL::TSimpleBox3::set(const T &ax, const T &ay, const T &az, const T &bx, const T &by, const T &bz) BALL::TSphere3::set(const TSphere3 &sphere) BALL::TSphere3::set(const TVector3< T > &point, const T &r) BALL::TSurface::set() BALL::TVector2::set(const T &value) BALL::TVector2::set(const T &vx, const T &vy) BALL::TVector2::set(const TVector2 &vector) BALL::TVector3::set(const T *ptr) BALL::TVector3::set(const T &value) BALL::TVector3::set(const T &vx, const T &vy, const T &vz) BALL::TVector3::set(const TVector3 &vector) BALL::TVector3::set(const T &r, const TAngle< T > &phi, const TAngle< T > &theta) BALL::TVector4::set(const T *ptr) BALL::TVector4::set(const T &rx, const T &ry, const T &rz, const T &rh=(T) 1) BALL::TVector4::set(const TVector4 &vector) BALL::TVector4::set(const T &value=(T) 1) BALL::AtomVector::set(const AtomVector &atoms) BALL::AtomVector::set(const Composite &composite, bool selected_only=false) BALL::Gradient::set(const Gradient &gradient) BALL::Gradient::set(const AtomVector &atoms) BALL::RuleProcessor::set() BALL::MolecularDynamics::set() BALL::CosineTorsion::Values::set() BALL::GraphEdge::set(const GraphEdge< Vertex, Edge, Face > &edge, bool deep=false) BALL::GraphEdge::set(Vertex *vertex0, Vertex *vertex1, Face *face0, Face *face1, Index index) BALL::GraphFace::set() BALL::GraphTriangle::set(const GraphTriangle< Vertex, Edge, Face > &face, bool deep=false) BALL::GraphTriangle::set(Vertex *vertex1, Vertex *vertex2, Vertex *vertex3, Edge *edge1, Edge *edge2, Edge *edge3, Index index) BALL::GraphVertex::set() BALL::ReducedSurface::set() BALL::RSEdge::set(const RSEdge &rsedge, bool deep=false) BALL::RSEdge::set(RSVertex *vertex0, RSVertex *vertex1, RSFace *face0, RSFace *face1, const TVector3< double > &center_of_torus, const double &radius_of_torus, const TAngle< double > &angle, const TCircle3< double > &circle0, const TCircle3< double > &circle1, const TVector3< double > &intersection_point0, const TVector3< double > &intersection_point1, bool singular, Index index) BALL::RSFace::set(const RSFace &rsface, bool deep=false) BALL::RSFace::set(RSVertex *vertex1, RSVertex *vertex2, RSVertex *vertex3, RSEdge *edge1, RSEdge *edge2, RSEdge *edge3, const TVector3< double > &center, const TVector3< double > &normal, bool singular, Index index) BALL::RSVertex::set() BALL::SASEdge::set(const SASEdge &sasedge, bool deep=false) BALL::SASEdge::set(SASVertex *vertex0, SASVertex *vertex1, SASFace *face0, SASFace *face1, const TCircle3< double > &circle, const TAngle< double > &angle, Index index) BALL::SASFace::set() BALL::SASVertex::set(const SASVertex &sasvertex, bool deep=false) BALL::SASVertex::set(const TVector3< double > point, Index index) BALL::SESEdge::set(const SESEdge &sesedge, bool deep=false) BALL::SESEdge::set(SESVertex *vertex0, SESVertex *vertex1, SESFace *face0, SESFace *face1, const TCircle3< double > &circle, RSEdge *rsedge, Type type, Index index) BALL::SESFace::set() BALL::SESVertex::set(const SESVertex &sesvertex, bool deep=false) BALL::SESVertex::set(const TVector3< double > point, const TVector3< double > &normal, Index atom, Index index) BALL::StructureMapper::set() BALL::Triangle::set() BALL::TrianglePoint::set() BALL::TriangulatedSAS::set() BALL::TriangulatedSES::set() BALL::TriangulatedSurface::set() BALL::TriangulatedSphere::set() BALL::Directory::set(const String &directory_path, bool set_current=false) BALL::Directory::set(const Directory &directory) BALL::VIEW::ColorExtension2::set() BALL::VIEW::MultiColorExtension::set() BALL::VIEW::ColorHSV::set(const ColorHSV &color) BALL::VIEW::ColorHSV::set(const ColorRGBA &color) BALL::VIEW::ColorHSV::set(const char *value) BALL::VIEW::ColorHSV::set(const String &value) BALL::VIEW::ColorHSV::set(const ColorUnitHue &hue, const ColorUnit &saturation, const ColorUnit &value) BALL::VIEW::ColorRGBA::set(const ColorRGBA &color) BALL::VIEW::ColorRGBA::set(const ColorHSV &color) BALL::VIEW::ColorRGBA::set(const char *value) BALL::VIEW::ColorRGBA::set(const String &value) BALL::VIEW::ColorRGBA::set(const QColor &color) BALL::VIEW::ColorRGBA::set(const ColorUnit &red_value, const ColorUnit &green_value, const ColorUnit &blue_value, const ColorUnit &alpha_value=(float) 1) BALL::VIEW::ColorUnit::set(const ColorUnit &color_unit) BALL::VIEW::ColorUnit::set(const char *value) BALL::VIEW::ColorUnit::set(const String &value) BALL::VIEW::ColorUnit::set(const unsigned char value) BALL::VIEW::ColorUnit::set(const short value) BALL::VIEW::ColorUnit::set(const unsigned short value) BALL::VIEW::ColorUnit::set(const int value) BALL::VIEW::ColorUnit::set(const unsigned int value) BALL::VIEW::ColorUnit::set(const long value) BALL::VIEW::ColorUnit::set(const unsigned long value) BALL::VIEW::ColorUnit::set(const float value) BALL::VIEW::ColorUnit::set(const double value) BALL::VIEW::ColorUnitHue::set(const ColorUnitHue &color_unit_hue) BALL::VIEW::ColorUnitHue::set(const char *value) BALL::VIEW::ColorUnitHue::set(const String &value) BALL::VIEW::ColorUnitHue::set(const short value) BALL::VIEW::ColorUnitHue::set(const unsigned short value) BALL::VIEW::ColorUnitHue::set(const int value) BALL::VIEW::ColorUnitHue::set(const unsigned int value) BALL::VIEW::ColorUnitHue::set(const long value) BALL::VIEW::ColorUnitHue::set(const unsigned long value) BALL::VIEW::ColorUnitHue::set(const float value) BALL::VIEW::ColorUnitHue::set(const double value) BALL::VIEW::ColorUnitHue::set(const long double value) BALL::VIEW::Dataset::set() BALL::VIEW::Vertex::set() BALL::VIEW::Vertex2::set() BALL::VIEW::GeometricObject::set() BALL::VIEW::AtomBondModelBaseProcessor::set() BALL::VIEW::AddBallAndStickModel::set() BALL::VIEW::ColorProcessor::set() BALL::VIEW::HBondModelProcessor::set() BALL::VIEW::Box::set() BALL::VIEW::Disc::set() BALL::VIEW::Label::set() BALL::VIEW::Line::set() BALL::VIEW::Mesh::set() BALL::VIEW::MultiLine::set() BALL::VIEW::Point::set() BALL::VIEW::SimpleBox::set() BALL::VIEW::Sphere::set() BALL::VIEW::Tube::set() BALL::VIEW::TwoColoredLine::set() BALL::VIEW::TwoColoredTube::set() BALL::VIEW::Hotkey::set() BALL::VIEW::Scene::set()
setAcidicColor BALL::VIEW::ResidueTypeColorProcessor
setActive BALL::VIEW::ClippingPlane
setAdditionalGridDistance BALL::VIEW::ColorProcessor
setAlphaBlending BALL::VIEW::ColorMap
setAlphas BALL::VIEW::MultiColorExtension
setAmberFF BALL::VIEW::AmberConfigurationDialog
setAmbientIntensity BALL::VIEW::Stage
setAminoAcidType BALL::Peptides::AminoAcidDescriptor
setAnimationSmoothness BALL::VIEW::Scene
setAntialiasing BALL::VIEW::GLRenderer
setApplyEnabled BALL::VIEW::Preferences
setAromatic BALL::SmilesParser::SPAtom
setAromaticColor BALL::VIEW::ResidueTypeColorProcessor
setArrowWidth BALL::VIEW::AddCartoonModel
setAtomAveraging BALL::CreateSpectrumProcessor
setAtomicNumber BALL::Element
setAtomicRadius BALL::Element
setAtomicWeight BALL::Element
setAtomIgnoring BALL::CreateSpectrumProcessor
setAtoms BALL::CHPI::CHGroup
setAtomTypeSmarts BALL::HybridisationProcessor
setAtomVelocities BALL::SnapShot
setAtomVelocitites BALL::SnapShot
setAttenuation BALL::VIEW::LightSource
setAttenuation_ BALL::VIEW::LightSettings
setAutoDeletable BALL::AutoDeletable
setBackboneDependent BALL::RotamerLibrary
setBackgroundColor BALL::VIEW::Stage
setBallAndStickStickDashedBondsEnabled BALL::VIEW::ModelSettingsDialog
setBallAndStickStickRadius BALL::VIEW::ModelSettingsDialog
setBarrier BALL::MPISupport
setBaseColors BALL::VIEW::ColorMap
setBaseDirectory BALL::VIEW::HelpViewer
setBaseFunction BALL::ScoringFunction
setBaseSize BALL::VIEW::ForceModel
setBasicColor BALL::VIEW::ResidueTypeColorProcessor
setBathRelaxationTime BALL::CanonicalMD
setBeta BALL::LineSearch
setBit BALL::BitVector
setBlue BALL::VIEW::ColorRGBA
setBondLengths BALL::BuildBondsProcessor
setBondOrder BALL::SmartsParser::SPBond
setBool BALL::Options
setBoudaryDerivatives BALL::CubicSpline1D
setBoundingBox BALL::TRRFile
setBox BALL::PeriodicBoundary
setBracketedFlag BALL::LineSearch
setBranchDesignator BALL::PDBAtom
setBreakpoints BALL::VIEW::ColorByGridProcessor
setBusyMode_ BALL::VIEW::MainControl
SetCamera BALL::VIEW
setCappingEnabled BALL::VIEW::ClippingPlane
setCartoonArrowWidth BALL::VIEW::ModelSettingsDialog
setCartoonDNABaseRadius BALL::VIEW::ModelSettingsDialog
setCartoonDNAHelixRadius BALL::VIEW::ModelSettingsDialog
setCartoonDNALadderRadius BALL::VIEW::ModelSettingsDialog
setCartoonHelixRadius BALL::VIEW::ModelSettingsDialog
setCartoonStrandHeight BALL::VIEW::ModelSettingsDialog
setCartoonStrandWidth BALL::VIEW::ModelSettingsDialog
setCartoonTubeRadius BALL::VIEW::ModelSettingsDialog
setCategory BALL::CIFFile::SaveFrame
setCAtom BALL::CHPI::CHGroup
setCellAngleAlpha BALL::CrystalInfo
setCellAngleBeta BALL::CrystalInfo
setCellAngleGamma BALL::CrystalInfo
setCellAngles BALL::CrystalInfo
setCellDimensions BALL::CrystalInfo
setCellEdgeLengthA BALL::CrystalInfo
setCellEdgeLengthB BALL::CrystalInfo
setCellEdgeLengthC BALL::CrystalInfo
setCenter BALL::RSFace
setCenterOfTorus BALL::RSEdge
setCFS_ BALL::SDGenerator
setChain BALL::NMRStarFile::BALLToBMRBMapper
setChainName BALL::Peptides::PeptideBuilder
setCharge BALL::Atom
setChirality BALL::SmilesParser::SPAtom
SetClippingPlane BALL::VIEW
setClippingPlane_ BALL::VIEW::GeometricControl
setClippingPlaneX BALL::VIEW::GeometricControl
setClippingPlaneY BALL::VIEW::GeometricControl
setClippingPlaneZ BALL::VIEW::GeometricControl
setClippingPosition BALL::VIEW::GeometricControl
setCoefficients BALL::PiecewiseFunction
setCoefficientStdErrors BALL::QSAR::RegressionValidation
setCoilColor BALL::VIEW::SecondaryStructureColorProcessor
setColor2 BALL::VIEW::ColorExtension2
setColor4ub_ BALL::VIEW::GLRenderer
setColoringMethod BALL::VIEW::Representation
setColoringSettingsDialog BALL::VIEW::DisplayProperties
setColorProcessor BALL::VIEW::Representation
setColorRGBA_ BALL::VIEW::GLRenderer
setColumn BALL::TMatrix4x4
setCompareMode BALL::String
setComponentGrouping BALL::SmartsParser
setComponentNumber BALL::SmartsParser::SPNode
setCompositeName BALL::VIEW::CompositeMessage
setConstant BALL::MutableConstant
setContactCircle BALL::RSEdge
setContentSize BALL::VIEW::MainControl
setControlsEnabled_ BALL::VIEW::LightSettings
setCorrectionParameter BALL::ShiftedLVMMMinimizer
setCovalentRadius BALL::Element
setCrystalInfo BALL::CrystalGenerator
setCurrentCharge BALL::GAMESSLogFile
setCurrentModel BALL::PDBInfo
setCurrentRepresentation BALL::VIEW::MaterialSettings
setCurrentTime BALL::MolecularDynamics
setCursor BALL::VIEW::EditableScene
setCurvature BALL::CubicSpline1D
setCustomColor BALL::VIEW::DisplayProperties
setDataPath BALL::Path
setDataset BALL::VIEW::DatasetMessage
setDatasetControl BALL::VIEW::DatasetController
setDataSource BALL::QSAR::Model
setDefault BALL::Options
setDefaultBool BALL::Options
setDefaultCommunicator BALL::MPISupport
setDefaultInteger BALL::Options
setDefaultLighting BALL::VIEW::Scene
setDefaultOptions_ BALL::NumericalSAS
setDefaultPage BALL::VIEW::HelpViewer
setDefaultPeak BALL::Experiment
setDefaultPositionAddress BALL::VIEW::Sphere
setDefaultRangeValues_ BALL::VIEW::RaytraceableContourSurfaceDialog
setDefaultReal BALL::Options
setDefaultValue BALL::CubicSpline1D
setDefaultValues BALL::VIEW::Preferences
setDefaultVertex1Address BALL::VIEW::Vertex2
setDefaultVertex2Address BALL::VIEW::Vertex2
setDefaultVertexAddress BALL::VIEW::Vertex
setDefaultVertexAddresses BALL::VIEW::Vertex2
setDegree BALL::PiecewisePolynomial
setDeletable BALL::VIEW::Message
setDeleteEntryEnabled BALL::VIEW::MainControl
setDemoMode BALL::VIEW::DemoTutorialDialog
setDepth BALL::TBox3
setDepthVector BALL::TBox3
setDescriptorIDs BALL::QSAR::Model
setDf BALL::QSAR
setDiffuseIntensity BALL::VIEW::Stage
setDirection BALL::VIEW::LightSource
setDirection_ BALL::VIEW::LightSettings
setDNABaseRadius BALL::VIEW::AddCartoonModel
setDNAHelixRadius BALL::VIEW::AddCartoonModel
setDNALadderRadius BALL::VIEW::AddCartoonModel
setDockedSystem BALL::VIEW::DockResultDialog
setDockResult BALL::VIEW::DockResultDialog
setDotSize BALL::VIEW::GridVisualisation
setDrawDNAAsLadderModel BALL::VIEW::AddCartoonModel
setDrawingMode BALL::VIEW::Representation
setDuplicateKeyCheck BALL::INIFile
setEditElementType BALL::VIEW::EditableScene
setEditorData BALL::VIEW::ComboBoxDelegate
setEDSPrefix BALL::VIEW::DownloadElectronDensity
setEDSSuffix BALL::VIEW::DownloadElectronDensity
setElectronegativity BALL::Element
setElement BALL::Atom
setElementCursor BALL::VIEW::EditableScene
setEMDBPrefix BALL::VIEW::DownloadElectronDensity
setEMDBSuffix BALL::VIEW::DownloadElectronDensity
setEnableAlpha BALL::VIEW::ColorButton
setEnergyDifference BALL::VIEW::MinimizationDialog
setEnergyDifferenceBound BALL::EnergyMinimizer
setEnergyMinimizer BALL::VIEW::EnergyMinimizerThread
setEpsilon BALL::RombergIntegrator
setEquivalences BALL::MMFF94ParametersBase
setError_ BALL::VIEW::PyWidget
setErrorText BALL::VIEW::EditSingleShortcut
setESParameters BALL::MMFF94ChargeProcessor
setExponent BALL::MutablePower
setEyeDistance BALL::VIEW::Stage
setF BALL::QSAR
setFdf BALL::QSAR
setFDPBDialog BALL::VIEW::CalculateFDPBThread
setFile BALL::Exception::GlobalExceptionHandler
setFilter BALL::VIEW::ShortcutTableView
setFinalizeOnDestruct BALL::MPISupport
setFinished BALL::ConnectedToPredicate::CTPNode
setFirstAtom BALL::Bond
setFirstColor BALL::VIEW::ResidueNumberColorProcessor
setFirstEdge BALL::SmartsParser::SPNode
setFirstMolecule BALL::ScoringFunction
setFirstSPEdge BALL::SmartsParser::SPEdge
setFirstSPNode BALL::SmartsParser::SPEdge
setFlags BALL::VIEW::PixelFormat
setFlushToDiskFrequency BALL::SnapShotManager
setFocalDistance BALL::VIEW::Stage
setFogIntensity BALL::VIEW::Stage
setFontSize BALL::VIEW::Label
setForce BALL::Atom
setForceBase BALL::VIEW::ModelSettingsDialog
setForceMaxLenght BALL::VIEW::ModelSettingsDialog
setForceOffset BALL::VIEW::ModelSettingsDialog
setForceScaling BALL::VIEW::ModelSettingsDialog
setForceStorage BALL::TRRFile
setFormalCharge_ BALL::VIEW::EditableScene
setFormat BALL::VIEW::FrameBuffer
setFPSEnabled BALL::VIEW::Scene
setFrameBufferFormat BALL::VIEW::BufferedRenderer
setFullScreen BALL::VIEW::Scene
setGeometricObjects BALL::VIEW::Representation
setGreen BALL::VIEW::ColorRGBA
setGroup BALL::Element
setGuest BALL::VIEW::DockWidget
setHandleStreamsExternally BALL::XDRPersistenceManager
setHAtom BALL::CHPI::CHGroup
setHBondRadius BALL::VIEW::ModelSettingsDialog
setHeightVector BALL::TBox3
setHelixColor BALL::VIEW::SecondaryStructureColorProcessor
setHelixRadius BALL::VIEW::AddCartoonModel
setHue BALL::VIEW::ColorHSV
setHumanReadable BALL::VIEW::POVRenderer
setHydrophobicColor BALL::VIEW::ResidueTypeColorProcessor
setIcon BALL::VIEW::ModularWidget
setIdentifier BALL::Embeddable
setImportant BALL::VIEW::LogEvent
setImprovedFlag BALL::StrangLBFGSMinimizer
setInBrackets BALL::SmilesParser::SPAtom
setIncidences BALL::TriangulatedSphere
setIndices BALL::TriangulatedSurface
setInfoColor BALL::VIEW::Stage
setINIFileSectionName BALL::VIEW::PreferencesEntry
setInitialGuess BALL::QSAR::FitModel
setInteger BALL::Options
setIntercept BALL::ScoringFunction
setInterpolationBoundaries BALL::VIEW::ColorMap
setIntersectionPoint BALL::RSEdge
setIntervals BALL::PiecewiseFunction
setIsotope BALL::SmilesParser::SPAtom
setIstream BALL::PersistenceManager
setKineticEnergy BALL::SnapShot
setKw BALL::QSAR::ALLModel
setLabelText_ BALL::VIEW::ModelSettingsDialog
setLastColor BALL::VIEW::ResidueNumberColorProcessor
setLevel BALL::LogStream
setLigand BALL::ScoringFunction
setLine_ BALL::INIFile::IteratorTraits_
setLinked BALL::ConnectedToPredicate::CTPNode
setLocked BALL::VIEW::ServerWidget::BALLViewServer
setLoggingFilename BALL::VIEW::MainControl
setLookAtPosition BALL::VIEW::Camera
setLookUpVector BALL::VIEW::Camera
setLowerDerivative BALL::CubicSpline1D
setMajorRadiusOfTorus BALL::RSEdge
setMatrix BALL::VIEW::TransformationMessage
setMaxColor BALL::VIEW::InterpolateColorProcessor
setMaxDistanceColor BALL::VIEW::AtomDistanceColorProcessor
setMaximalNumberOfIterations BALL::MolecularDynamics
setMaximalSimulationTime BALL::MolecularDynamics
setMaximumDisplacement BALL::EnergyMinimizer
setMaxIterations BALL::VIEW::MinimizationDialog
setMaxLength BALL::VIEW::ForceModel
setMaxLevel BALL::LogStream
setMaxNumberOfIterations BALL::EnergyMinimizer
setMaxNumOfColumns BALL::ShiftedLVMMMinimizer
setMaxNumOfStoredVectPairs BALL::StrangLBFGSMinimizer
setMaxNumSteps BALL::RombergIntegrator
setMaxOptimizationSteps BALL::DNAMutator
setMaxSameEnergy BALL::EnergyMinimizer
setMaxSteps BALL::LineSearch
setMenuHelp BALL::VIEW::ModularWidget
setMesh BALL::VIEW::MeshBuffer
setMicroCanonical BALL::VIEW::MolecularDynamicsDialog
setMiddleColor BALL::VIEW::ResidueNumberColorProcessor
setMinColor BALL::VIEW::InterpolateColorProcessor
setMinGridSpacing BALL::VIEW::ColorProcessor
setMinLevel BALL::LogStream
setMinMaxColors BALL::VIEW::ColorMap
setMinQuality BALL::QSAR::AutomaticModelCreator
setMMFF94 BALL::VIEW::MMFF94ConfigurationDialog
setModelData BALL::VIEW::ComboBoxDelegate
setModelProcessor BALL::VIEW::Representation
setModelSettingsDialog BALL::VIEW::DisplayProperties
setMolecularDynamics BALL::VIEW::MDSimulationThread
setMolecule BALL::CIFFile
setMouseSensitivity BALL::VIEW::Scene
setMouseWheelSensitivity BALL::VIEW::Scene
setMpiInfo BALL::MPISupport
setMultithreading BALL::VIEW::MainControl
setMutations BALL::SideChainPlacementProcessor
setNamesTitle BALL::VIEW::ColorTable
setNamingStandard BALL::FragmentDB::NormalizeNamesProcessor
setNeedsSSSR BALL::SmartsParser
setNeedsUpdate BALL::VIEW::Representation
setNegate BALL::ExpressionTree
setNextComponentNumberToSubTree BALL::SmartsParser
setNMRAtomDataSet BALL::NMRStarFile::BALLToBMRBMapper
setNMRAtomDataSetByName BALL::NMRStarFile::BALLToBMRBMapper
setNMRStarFile BALL::NMRStarFile::BALLToBMRBMapper
setNoOrthoComponents BALL::QSAR::OPLSModel
setNotProperty BALL::SmartsParser::SPAtom
setNullDistanceColor BALL::VIEW::AtomDistanceColorProcessor
setNumberDensity BALL::SolventDescriptor
setNumberOfATOMRecords BALL::PDBInfo
setNumberOfAtoms BALL::SnapShot
setNumberOfColors BALL::VIEW::ColorMap
setNumberOfHETATMRecords BALL::PDBInfo
setNumberOfIteration BALL::MolecularDynamics
setNumberOfIterations BALL::EnergyMinimizer
setNumberOfModels BALL::PDBInfo
setNumberOfRecords BALL::PDBInfo
setNumberOfStepsBetweenUpdates BALL::VIEW::SimulationThread
setNumberOfTorsions BALL::ResidueRotamerSet
setNumLevels BALL::VIEW::ColorByGridProcessor
setObject BALL::VIEW::RegisterHelpSystemMessage
setOccupancy BALL::PDBAtom
setOffScreenRendering BALL::VIEW::Scene
setOmega BALL::Peptides::AminoAcidDescriptor
setOmega_ BALL::Peptides::PeptideBuilder
setOpenItems BALL::VIEW::NewSelectionMessage
setOrder BALL::Bond
setOrthographicZoom BALL::VIEW::GLRenderer
setOtherColor BALL::VIEW::ResidueTypeColorProcessor
setParameters_ BALL::VIEW::RunGAMESSDialog
setParent_ BALL::VIEW::ConnectionObject
setPeriod BALL::Element
setPhi BALL::Peptides::AminoAcidDescriptor
setPitch BALL::VIEW::FrameBufferFormat
setPixelFormat BALL::VIEW::FrameBufferFormat
setPolarColor BALL::VIEW::ResidueTypeColorProcessor
setPosition_ BALL::VIEW::LightSettings
setPositionAddress BALL::VIEW::Sphere
setPositions BALL::CubicSpline1D
setPotentialEnergy BALL::SnapShot
setPOVNumber BALL::VIEW::Scene
setPrecision BALL::TRRFile
setPreferencesEnabled_ BALL::VIEW::MainControl
setPreview BALL::VIEW::Scene
setPreviewMode BALL::VIEW::Renderer
setProcessor BALL::VIEW::AssignBondOrderResultsDialog
setProject BALL::VIEW::HelpViewer
setProjection BALL::VIEW::GLRenderer
setProjectionMode BALL::VIEW::Camera
setPropertyManager BALL::VIEW::PropertyEditor
setProteinName BALL::Peptides::PeptideBuilder
setProteins BALL::BackboneClusterer
setPsi BALL::Peptides::AminoAcidDescriptor
setQ2 BALL::QSAR::RegressionValidation
setQuadraticValues_ BALL::VIEW::MaterialSettings
setQualityIncreaseCutoff BALL::QSAR::FeatureSelection
setRange BALL::VIEW::ColorMap
setRDF BALL::RDFIntegrator
setRDFIntegrator BALL::Pair6_12InteractionEnergyProcessor
setRDFParameters BALL::Pair6_12InteractionEnergyProcessor
setReadPDBModels BALL::VIEW::MolecularFileDialog
setReal BALL::Options
setReceiveBufferUpdates BALL::VIEW::RenderSetup
setReceptor BALL::ScoringFunction
setRed BALL::VIEW::ColorRGBA
setReferenceTemperature BALL::MolecularDynamics
setRefresh BALL::VIEW::MinimizationDialog
setRegisterMode BALL::VIEW::RegisterHelpSystemMessage
setRelativeToCamera BALL::VIEW::LightSource
setRemotenessIndicator BALL::PDBAtom
setRenderMode BALL::VIEW::GLRenderer
setRibbonMode BALL::VIEW::AddBackboneModel
setRightVector BALL::TBox3
setRing BALL::CHPI::AromaticRing
setRingSize BALL::RingFinder
setRoot BALL::SmartsParser
setRotamer BALL::ResidueRotamerSet
setRotationX BALL::TMatrix4x4
setRotationY BALL::TMatrix4x4
setRotationZ BALL::TMatrix4x4
setRow BALL::TMatrix4x4
setRS BALL::SolventAccessibleSurface
setRSFace BALL::SESFace
setRSVertex BALL::SESFace
sets_ BALL::MOL2File
setSaturation BALL::VIEW::ColorHSV
setSaveImages BALL::VIEW::MDSimulationThread
setScaling BALL::VIEW::ForceModel
setScalingFactorFile BALL::GeneralizedBornModel
setScalingFactors BALL::GeneralizedBornModel
setScene BALL::VIEW::AnimationThread
setScoring BALL::ConformationSet
setScoringFunction BALL::ScoringComponent
setScreenShotNumber BALL::VIEW::Scene
setSecondaryStructureType_ BALL::SecondaryStructureProcessor
setSecondAtom BALL::Bond
setSecondEdge BALL::SmartsParser::SPNode
setSecondMolecule BALL::ScoringFunction
setSecondSPEdge BALL::SmartsParser::SPEdge
setSecondSPNode BALL::SmartsParser::SPEdge
setSelection_ BALL::VIEW::MolecularControl
setSender BALL::VIEW::Message
setShiftRange BALL::Bruker2DFile
setShininess BALL::VIEW::Stage
setShortcutText BALL::VIEW::EditSingleShortcut
setShowLightSources BALL::VIEW::Scene
setShowOnlyInLogView BALL::VIEW::LogEvent
setShowSelected BALL::VIEW::AtomDistanceColorProcessor
setShowSelectionInfos BALL::VIEW::CompositeMessage
setSimulationThread BALL::VIEW::MainControl
setSmoothLines BALL::VIEW::GLRenderer
setSnapShotManager BALL::VIEW::SnapshotVisualisationDialog
setSoluteDC BALL::GeneralizedBornModel
setSolventAtomDescriptorList BALL::SolventDescriptor
setSolventDC BALL::GeneralizedBornModel
setSolventDescriptor BALL::Pair6_12InteractionEnergyProcessor
setSource BALL::VIEW::DragLogView
setSpaceGroup BALL::CrystalInfo
setSpacing BALL::Spectrum
setSPAtom BALL::SmartsParser::SPNode
setSPBond BALL::SmartsParser::SPEdge
setSpecialCharacters_ BALL::NMRStarFile
setSpecularIntensity BALL::VIEW::Stage
setSphere BALL::SASFace
setSplitRadius BALL::VIEW::ModifyRepresentationDialog
setStickRadius BALL::VIEW::AddBallAndStickModel
setSticks BALL::Spectrum
setStickStickRadius BALL::VIEW::ModelSettingsDialog
setStrandColor BALL::VIEW::SecondaryStructureColorProcessor
setStrandHeight BALL::VIEW::AddCartoonModel
setStrandWidth BALL::VIEW::AddCartoonModel
SetStruct BALL::MOL2File
setStyle BALL::VIEW::MainControlPreferences
setSuffix BALL::VIEW::DownloadPDBFile
setSurfaceProbeRadius BALL::VIEW::ModelSettingsDialog
setSwapEndian BALL::BinaryFileAdaptor
setSwapSideBySideStereo BALL::VIEW::Stage
setSysPath BALL::PyInterpreter
setSystems BALL::VIEW::DockDialog
setTemperature BALL::VIEW::MolecularDynamicsDialog
setTemperatureFactor BALL::PDBAtom
setTemplateResidue BALL::ResidueRotamerSet
setTestLine BALL::QSAR::Validation
setTextColor BALL::VIEW
setTexture BALL::VIEW::GridVisualisation
setTextureUpDirection_ BALL::VIEW::StageSettings
setTimeout BALL::SimpleDownloader
setting_content_ BALL::VIEW::ColorTable
setTo BALL::TContourSurface::Cube
setTorsionAngle_ BALL::ResidueRotamerSet
setTorsionPhi BALL::ResidueRotamerSet
setTorsionPsi BALL::ResidueRotamerSet
setTrainingLine BALL::QSAR::Validation
setTrajectoryFile BALL::SnapShotManager
setTransformation BALL::TransformationProcessor
setTransparencyEnabled BALL::VIEW::GridColorWidget
setTriangle BALL::TriangleEdge
setTurnColor BALL::VIEW::SecondaryStructureColorProcessor
setTurnPoint BALL::VIEW::Scene
setType_ BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
setTypeName BALL::Atom
setUnit BALL::Descriptor
setUnitConversionFactor BALL::GAMESSLogFile
setUnsignedChar BALL::BitVector
setUnsignedInt BALL::BitVector
setUnsignedLong BALL::BitVector
setUnsignedShort BALL::BitVector
setup
BALL::RandomNumberGenerator::setup() BALL::AmberBend::setup() BALL::AmberNonBonded::setup() BALL::AmberStretch::setup() BALL::AmberTorsion::setup() BALL::CharmmBend::setup() BALL::CharmmImproperTorsion::setup() BALL::CharmmNonBonded::setup() BALL::CharmmStretch::setup() BALL::CharmmTorsion::setup() BALL::ForceField::setup(System &system) BALL::ForceField::setup(System &system, const Options &options) BALL::ForceFieldComponent::setup() BALL::PeriodicBoundary::setup() BALL::SnapShotManager::setup(System *my_system, const ForceField *my_forcefield, TrajectoryFile *my_snapshot_file) BALL::SnapShotManager::setup(System *my_system, TrajectoryFile *my_snapshot_file) BALL::SnapShotManager::setup() BALL::CanonicalMD::setup(ForceField &force_field, SnapShotManager *ssm=0) BALL::CanonicalMD::setup(ForceField &force_field, SnapShotManager *ssm, const Options &options) BALL::MicroCanonicalMD::setup(ForceField &myforcefield, SnapShotManager *ssm) BALL::MicroCanonicalMD::setup(ForceField &myforcefield, SnapShotManager *ssm, const Options &myoptions) BALL::MolecularDynamics::setup(ForceField &force_field, SnapShotManager *snapshot_man) BALL::MolecularDynamics::setup(ForceField &forcefield, SnapShotManager *snapshot_man, const Options &myoptions) BALL::EnergyMinimizer::setup(ForceField &force_field) BALL::EnergyMinimizer::setup(ForceField &force_field, SnapShotManager *ssm) BALL::EnergyMinimizer::setup(ForceField &force_field, SnapShotManager *ssm, const Options &options) BALL::EnergyMinimizer::setup(ForceField &force_field, const Options &options) BALL::MMFF94NonBonded::setup() BALL::MMFF94OutOfPlaneBend::setup() BALL::MMFF94ChargeProcessor::setup() BALL::MMFF94StretchBend::setup() BALL::MMFF94Torsion::setup() BALL::ScoringComponent::setup() BALL::ScoringFunction::setup() BALL::ScoringFunction::setup(Molecule &receptor, Molecule &ligand) BALL::ScoringFunction::setup(Molecule &receptor, Molecule &ligand, const Options &options) BALL::ScoringTypes::setup() BALL::AromaticRingStacking::setup() BALL::BuriedPolar::setup() BALL::CHPI::setup() BALL::HydrogenBond::setup() BALL::Lipophilic::setup() BALL::ChemScoreMetal::setup() BALL::NonpolarSolvation::setup() BALL::PolarSolvation::setup() BALL::RotationalEntropyLoss::setup() BALL::VanDerWaals::setup() BALL::FresnoTypes::setup() BALL::GeneralizedBornModel::setup() BALL::FDPB::setup(System &system) BALL::FDPB::setup(System &system, Options &options) BALL::AtomTyper::setup() BALL::DNAMutator::setup() BALL::ConformationSet::setup() BALL::DockingAlgorithm::setup(System &system1, System &system2, Options &new_options) BALL::DockingAlgorithm::setup(System &system1, System &system2) BALL::GeometricFit::setup(System &system1, System &system2, Options &new_options) BALL::GeometricFit::setup(System &system1, System &system2) BALL::Kekuliser::setup() BALL::VIEW::EditSingleShortcut::setup() BALL::VIEW::SnapshotManagerInterface::setup() BALL::VIEW::FakeDriver::setUp() BALL::VIEW::InputDeviceDriver::setUp()
setup_ff_ BALL::VIEW::MolecularStructure
setup_time_stamp_ BALL::ForceField
setupAromaticTypes BALL::MMFF94AtomTyper
setupAtomArray BALL::FDPB
setupBends_ BALL::MMFF94StretchBend
setupBoundary BALL::FDPB
setUpdateInterval BALL::VIEW::FileObserver
setUpdateRepresentations BALL::VIEW::CompositeMessage
setupEpsGrid BALL::FDPB
setupForceField BALL::VIEW::MolecularStructure
setupForceField_ BALL::VIEW::MolecularStructure
setupGridClipPlanes_ BALL::VIEW::GLRenderer
setupHydrogenTypes BALL::MMFF94AtomTyper
setupKappaGrid BALL::FDPB
setUpperBound BALL::CubicSpline1D
setUpperDerivative BALL::CubicSpline1D
setupPhiGrid BALL::FDPB
setupQGrid BALL::FDPB
setupSASGrid BALL::FDPB
setupStretchBends_ BALL::MMFF94StretchBend
setupStretches_ BALL::MMFF94StretchBend
setupSymbolsToTypes BALL::MMFF94AtomTyper
setupViewVolume BALL::VIEW::Scene
setUseConjugateGradient BALL::VIEW::MinimizationDialog
setUsedProperty BALL::DNAMutator
setUseFormalCharges BALL::Kekuliser
setUsePotentialGrid BALL::VIEW::FieldLineCreator
setUser2ScreenDistance_ BALL::VIEW::StageSettings
setUserEyeDistance_ BALL::VIEW::StageSettings
setUserEyeLevel_ BALL::VIEW::StageSettings
setUseShiftedLVMM BALL::VIEW::MinimizationDialog
setUseStrangLBFGS BALL::VIEW::MinimizationDialog
setValues BALL::CubicSpline1D
setValues_ BALL::VIEW::MaterialSettings
setVanDerWaalsRadius BALL::Element
setVector BALL::Options
setVelocity BALL::Atom
setVelocityStorage BALL::TRRFile
setVertex1Address BALL::VIEW::Vertex2
setVertex2Address BALL::VIEW::Vertex2
setVertexAddress BALL::VIEW::Vertex
setVertexAddresses BALL::VIEW::Vertex2
setViewPoint BALL::VIEW::Camera
setViewPoint_ BALL::VIEW::Scene
setVRMLNumber BALL::VIEW::Scene
setWhatsThisEnabled BALL::VIEW::HelpViewer
setWidgetStack BALL::VIEW::PreferencesEntry
setWidgetStackName BALL::VIEW::PreferencesEntry
setWorkingDirFromFilename_ BALL::VIEW::ModularWidget
setXDefaultValues BALL::CubicSpline2D
setXLowerBounds BALL::CubicSpline2D
setXLowerDerivatives BALL::CubicSpline2D
setXTol BALL::LineSearch
setXUpperBounds BALL::CubicSpline2D
setXUpperDerivatives BALL::CubicSpline2D
setYDefaultValue BALL::CubicSpline2D
setYLowerBound BALL::CubicSpline2D
setYLowerDerivative BALL::CubicSpline2D
setYUpperBound BALL::CubicSpline2D
setYUpperDerivative BALL::CubicSpline2D
setZScore BALL::CrystalInfo
sg_symops_ BALL::CrystalInfo
sgeev_ lapack.h
sgesdd_ lapack.h
sgn BALL::Maths
SHANNO BALL::ConjugateGradientMinimizer
share_from_ BALL::VIEW::GLOffscreenTarget
shared_bonds BALL::RingAnalyser::Ring
sheet_ BALL::SecondaryStructureProcessor
sheet_ID BALL::PDB::RecordSHEET
sheet_list_ BALL::PDBFile
sheet_records BALL::PDB::BookKeeping
shift_map_ BALL::RandomCoilShiftProcessor
shift_references_ BALL::NMRStarFile
shift_s_ BALL::ShiftedLVMMMinimizer
shift_units BALL::NMRStarFile::ShiftReferenceElement
shifted_direction_ BALL::ShiftedLVMMMinimizer
ShiftHyperSurface_ BALL::EmpiricalHSShiftProcessor
ShiftModel BALL
ShiftReferenceElement BALL::NMRStarFile::ShiftReferenceElement
ShiftReferenceElement BALL::NMRStarFile
ShiftReferenceSet BALL::NMRStarFile::ShiftReferenceSet
ShiftReferenceSet BALL::NMRStarFile
shifts BALL::NMRStarFile::MolecularSystem::ChemicalUnit
ShiftXwise_hydrogen_bonds_computation_ BALL::HBondShiftProcessor
shininess BALL::VIEW::Stage::RaytracingMaterial
shininess_ BALL::VIEW::Stage
shininessFactorChanged BALL::VIEW::MaterialSettings
shortcut_ BALL::VIEW::TestFramework
shortcut_keys_ BALL::VIEW::ShortcutRegistry
shortcut_registry_ BALL::VIEW::MainControl
shortcutChanged_ BALL::VIEW::ShortcutDialog
ShortcutDialog BALL::VIEW::ShortcutDialog
ShortcutDialog BALL::VIEW
ShortcutRegistry BALL::VIEW::ShortcutRegistry
ShortcutRegistry BALL::VIEW
shortcuts_ BALL::VIEW::ShortcutRegistry
ShortcutTableModel BALL::VIEW::ShortcutTableModel
ShortcutTableModel BALL::VIEW
ShortcutTableView BALL::VIEW::ShortcutTableView
ShortcutTableView BALL::VIEW
show_coordinate_system_ BALL::VIEW::Stage
show_fps_ BALL::VIEW::Scene
show_preview_ BALL::VIEW::Renderer
show_ruler_ BALL::VIEW::RenderSetup
show_selection_ BALL::VIEW::AtomDistanceColorProcessor
show_selection_infos_ BALL::VIEW::CompositeMessage
show_ss_ BALL::VIEW::MolecularControl
show_ss_id_ BALL::VIEW::MolecularControl
show_window_enty_ BALL::VIEW::ModularWidget
showAmberForceFieldOptions BALL::VIEW::MolecularStructure
showAtomOverview BALL::VIEW::MolecularControl
showAtomOverviewForSelection BALL::VIEW::MolecularControl
showBondOrderAssignmentResults BALL::VIEW::MolecularStructure
showCharmmForceFieldOptions BALL::VIEW::MolecularStructure
showClassDocu BALL::VIEW::PyWidget
showCompletion BALL::VIEW::PyWidget
showCoordinateSystem BALL::VIEW::Stage
showDemo BALL::VIEW::DemoTutorialDialog
ShowDisplayPropertiesMessage BALL::VIEW::ShowDisplayPropertiesMessage
showDockingOptions BALL::VIEW::DockResultDialog
showDockResult BALL::VIEW::DockResultController
showDocumentation BALL::VIEW::PyWidget
showDocumentationFor BALL::VIEW::HelpViewer
showDocumentationForObject BALL::VIEW::HelpViewer
showEditContextMenu BALL::VIEW::PyWidget
showEntry BALL::VIEW::Preferences
showExportPNGDialog BALL::VIEW::Scene
showExportVRMLDialog BALL::VIEW::Scene
showFilename BALL::VIEW::MolecularControl
showHelp_ BALL::VIEW::PyWidget
showHelpFor BALL::VIEW::HelpViewer
ShowHelpMessage BALL::VIEW
ShowHelpMessage BALL::VIEW::ShowHelpMessage
showInfos BALL::VIEW::Scene
showLightSources BALL::VIEW::Renderer
showLightSourcesEnabled BALL::VIEW::Scene
showMMFF94ForceFieldOptions BALL::VIEW::MolecularStructure
showObjects BALL::VIEW::CanvasWidget
showOnlyInLogView BALL::VIEW::LogEvent
showRuler BALL::VIEW::RenderSetup
showScoringOptions_ BALL::VIEW::DockResultDialog
showSelected BALL::VIEW::AtomDistanceColorProcessor
showSelectionInfos BALL::VIEW::CompositeMessage
showSelectorHelp BALL::VIEW::MolecularControl
showSnapshot BALL::VIEW::DockResultDialog
showText BALL::VIEW::Scene
showTutorial BALL::VIEW::DemoTutorialDialog
showViewPoint_ BALL::VIEW::Scene
shrink BALL::TriangulatedSurface
Si BALL::Element
sig11 BALL::PDB::RecordSIGUIJ
sig12 BALL::PDB::RecordSIGUIJ
sig13 BALL::PDB::RecordSIGUIJ
sig22 BALL::PDB::RecordSIGUIJ
sig23 BALL::PDB::RecordSIGUIJ
sig33 BALL::PDB::RecordSIGUIJ
sig_w BALL::CharmmEEF1::Values
sig_w_ BALL::CharmmEEF1
sigma_ BALL::QSAR::LDAModel
SIGNED_INT_CHANNEL BALL::VIEW::ChannelFormat
silent_ BALL::VIEW::PyWidget
SILICIUM BALL::Element
SILICON BALL::Element
SILVER BALL::Element
SimpleBase BALL
SimpleBox BALL::VIEW
SimpleBox3 BALL
simpleCanBeAromatic_ BALL::AromaticityProcessor
simpleCanBeAromaticWeaker_ BALL::AromaticityProcessor
simulate BALL::MolecularDynamics
simulateTime BALL::MolecularDynamics
simulation_icon_ BALL::VIEW::MainControl
simulation_running_xpm_ BALL::VIEW::MainControl
simulation_stoped_xpm_ BALL::VIEW::MainControl
simulation_thread_ BALL::VIEW::MainControl
SimulationThread BALL::VIEW
SINGLE BALL::SmartsParser::SPBond
SINGLE__CHI BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
SINGLE__DISCRETE BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
SINGLE__REAL BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
SINGLE_BOND BALL::GAFFCESParser::APSMatcher
SINGLE_BOND_TO_PARENT BALL::GAFFCESParser::APSMatcher
SINGLE_DOWN BALL::SmartsParser::SPBond
SINGLE_DOWN_OR_ANY BALL::SmartsParser::SPBond
SINGLE_OR_AROMATIC BALL::SmartsParser::SPBond
single_pick_ BALL::VIEW::GLRenderer
SINGLE_UP BALL::SmartsParser::SPBond
SINGLE_UP_OR_ANY BALL::SmartsParser::SPBond
SingleAmberTorsion BALL::AmberTorsion
SingleCharmmTorsion BALL::CharmmTorsion
SingleData BALL::CosineTorsion
SingleValues BALL::CosineTorsion
singular_edges_ BALL::SolventExcludedSurface
SingularEdgeIterator BALL::SolventExcludedSurface
SingularIterator BALL::Exception::SingularIterator
SingularIterator BALL::Exception
SingularMatrixError BALL::QSAR::Exception::SingularMatrixError
SingularMatrixError BALL::QSAR::Exception
Site BALL::Enumerator
site_records BALL::PDB::BookKeeping
SiteList BALL::Enumerator
SIZE_MAX BALL
SIZE_MIN BALL
SizeOfSSSR BALL
sizes_ BALL::VIEW::IconLoader
SizeType BALL::PDBRecords
SizeUnderflow BALL::Exception::SizeUnderflow
SizeUnderflow BALL::Exception
SizeVector BALL::UCK
skipCurrentRecord BALL::PDBFile
skipLines BALL::LineBasedFile
skipped_records_ BALL::PDBInfo
skipWhitespaces_ BALL::ResourceFile
sl_keys_ BALL::VIEW::ComboBoxDelegate
sl_modifier_ BALL::VIEW::ComboBoxDelegate
SLATER_KIRKWOOD_FORMAT BALL::LennardJones
sleepFor BALL
SLICKScore BALL
sliderDragEnded_ BALL::VIEW::SnapshotVisualisationDialog
sliderDragStarted_ BALL::VIEW::SnapshotVisualisationDialog
sliderMovedToPos BALL::VIEW::SnapshotVisualisationDialog
slides_ BALL::VIEW::AddBackboneModel
slides_angle_ BALL::VIEW::AddBackboneModel
SList BALL::PDB
Sm BALL::Element
smallX BALL::VIEW::VRMLRenderer
smallY BALL::VIEW::VRMLRenderer
smallZ BALL::VIEW::VRMLRenderer
SMART_MATCHING BALL::HybridisationProcessor::Method
SMART_OBJECT BALL::NamedProperty
smart_pointer_list_ BALL::PersistenceManager
SmartPointerList BALL::PersistenceManager
smarts_edit_ BALL::VIEW::MolecularControl
smiles BALL::VIEW::PubChemDialog::ParsedResult_
smiles_parser_ BALL::VIEW::PubChemDialog
smooth_lines_ BALL::VIEW::GLRenderer
smoothCFSAngle_ BALL::SDGenerator
Sn BALL::Element
snap_shot_manager_ BALL::VIEW::SnapshotVisualisationDialog
SnapShot BALL
snapshot_ BALL::EnergyMinimizer
snapshot_buffer_ BALL::SnapShotManager
snapshot_interface_ BALL::VIEW::UndoManagerDialog
snapshot_manager_ptr_ BALL::MolecularDynamics
snapShotInputTest BALL::VIEW::SnapshotVisualisationDialog
SnapshotManagerInterface BALL::VIEW::SnapshotManagerInterface
SnapshotVisualisationDialog BALL::VIEW::SnapshotVisualisationDialog
SNBModel BALL::QSAR
SNBModel BALL::QSAR::SNBModel
SODIUM BALL::Element
soffsetf1_ BALL::Bruker2DFile
soffsetf2_ BALL::Bruker2DFile
softening_limit_ BALL::VanDerWaals
Solution BALL::AssignBondOrderProcessor
Solution_ BALL::AssignBondOrderProcessor
solution_number_ BALL::VIEW::AssignBondOrderResultsDialog
solution_systems_ BALL::VIEW::AssignBondOrderResultsDialog
solvation_ BALL::CharmmNonBonded
solvation_energy_ BALL::CharmmNonBonded
solvation_parameters_ BALL::CharmmNonBonded
solve BALL::FDPB
SOLVENT_ACCESSIBLE_SURFACE BALL::SurfaceProcessor
solvent_descriptor_ BALL::SolventParameter
SOLVENT_EXCLUDED_SURFACE BALL::SurfaceProcessor
solvent_number_density_ BALL::NonpolarSolvation
SolventAtomDescriptor BALL::SolventAtomDescriptor
sortBy BALL::DockResult
sorted_by_ BALL::DockResult
sorted_spheres_ BALL::BindingPocketProcessor
SortedPosition2 BALL::SortedPosition2
SortedPosition3 BALL::SortedPosition3
sortSelectedAtomVector_ BALL::ForceField
sortTable BALL::VIEW::DockResultDialog
source_ BALL::EdgeItem
sources BALL::PDB::RecordSOURCE
SP BALL::SmilesParser
sp_atom_ BALL::SmartsParser::SPNode
SPAtom BALL::SmilesParser
SPAtom BALL::SmartsParser
SPBond BALL::SmilesParser
SPBond BALL::SmartsParser
SPBondOrder BALL::SmartsParser::SPBond
special_characters_ BALL::NMRStarFile
special_radius_ BALL::VIEW::AddBallAndStickModel
specific_model_ID BALL::PDB::RecordCISPEP
Specification BALL::PDB
SpecificationList BALL::PDB
Spectrum BALL
Spectrum1D BALL
Spectrum2D BALL
Spectrum3D BALL
specular_ BALL::VIEW::Stage
specular_color BALL::VIEW::Stage::RaytracingMaterial
specular_intensity BALL::VIEW::Stage::RaytracingMaterial
specularityFactorChanged BALL::VIEW::MaterialSettings
SPEdge BALL::SmartsParser
Sphere BALL::VIEW
Sphere3 BALL
Sphere_ BALL::BindingPocketProcessor
sphere_grid_ BALL::BindingPocketProcessor
sphere_list_ BALL::VIEW::GLRenderer
sphere_rad_ BALL::BindingPocketProcessor
SphereComparator_ BALL::BindingPocketProcessor
spheres_ BALL::SurfaceProcessor
spheric_faces_ BALL::SolventExcludedSurface
SphericFaceIterator BALL::SolventExcludedSurface
SPIRO BALL::RingAnalyser
splines_ BALL::CubicSpline2D
split_ BALL::VIEW::ExportGeometryDialog
splitIntoMolecules BALL::ConnectedComponentsProcessor
splitMethodChanged BALL::VIEW::ModifyRepresentationDialog
splitQuoted BALL::String
splitSphericFace BALL::SolventExcludedSurface
splitSphericFaces BALL::SolventExcludedSurface
SPNode BALL::SmartsParser
spointnumf1_ BALL::Bruker2DFile
spointnumf2_ BALL::Bruker2DFile
sq BALL::QSAR::Statistics
sqrt2Pi_ BALL::QSAR::SNBModel
square_distance_ BALL::VIEW::ModifyRepresentationDialog
SQUARE_ROOT BALL::ShiftedLVMMMinimizer
squared_distance_ BALL::FragmentDistanceCollector
squared_distances_ BALL::GeneralizedBornModel
Sr BALL::Element
ss_ BALL::VIEW::AddBackboneModel
ssbond_correction_ BALL::EmpiricalHSShiftProcessor
ssbond_list_ BALL::PDBFile
ssbonds BALL::PDB::Structure
ssE_ BALL::QSAR::RegressionValidation
sslErrors BALL::SimpleDownloaderHelper::BasicHelper
sspevd_ lapack.h
ssR_ BALL::QSAR::RegressionValidation
ssY_ BALL::QSAR::RegressionValidation
stack_capacity_ BALL::ResourceEntry::IteratorTraits_
stack_index_ BALL::ResourceEntry::IteratorTraits_
stack_pages_ BALL::VIEW::PreferencesEntry
stack_size_ BALL::ResourceEntry::IteratorTraits_
StackPages BALL::VIEW::PreferencesEntry
Stage BALL::VIEW
stage_settings_ BALL::VIEW::Scene
StageSettings BALL::VIEW
StageSettings BALL::VIEW::StageSettings
StampType BALL::Composite
standard_bond_exists BALL::MMFF94StretchParameters::BondData
standard_occupancy_deviation BALL::PDB::RecordSIGATM
standard_residue_name BALL::PDB::RecordMODRES
standard_temperature_deviation BALL::PDB::RecordSIGATM
standard_vector_deviation BALL::PDB::RecordSIGATM
standardized_moments BALL::Spectrum
standards_ BALL::FragmentDB
STANNUM BALL::Element
start
BALL::UnaryProcessor::start() BALL::BinaryProcessor::start() BALL::EnergyProcessor::start() BALL::CIFFile::SaveFrame::start() BALL::CIFFile::Datablock::start() BALL::Selector::start() BALL::RuleProcessor::start() BALL::MMFF94ChargeProcessor::start() BALL::CreateSpectrumProcessor::start() BALL::EFShiftProcessor::start() BALL::EmpiricalHSShiftProcessor::start() BALL::SimpleExperiment1D::start() BALL::HaighMallionShiftProcessor::start() BALL::HBondShiftProcessor::start() BALL::JohnsonBoveyShiftProcessor::start() BALL::ShiftModel::start() BALL::ShiftModel1D::start() BALL::ShiftModel2D::start() BALL::ShiftModule::start() BALL::AromaticityProcessor::start() BALL::AddHydrogenProcessor::start() BALL::AssignBondOrderProcessor::start() BALL::BuildBondsProcessor::start() BALL::ConnectedComponentsProcessor::start() BALL::AssignRadiusProcessor::start() BALL::AssignChargeProcessor::start() BALL::DockingAlgorithm::start() BALL::GeometricFit::start() BALL::FragmentDB::NormalizeNamesProcessor::start() BALL::FragmentDB::BuildBondsProcessor::start() BALL::BoundingBoxProcessor::start() BALL::GeometricCenterProcessor::start() BALL::FragmentDistanceCollector::start() BALL::HBondProcessor::start() BALL::HybridisationProcessor::start() BALL::ReconstructFragmentProcessor::start() BALL::ResidueChecker::start() BALL::RingAnalyser::start() BALL::SideChainPlacementProcessor::start() BALL::SurfaceProcessor::start() BALL::Timer::start() BALL::VIEW::AddBackboneModel::start() BALL::VIEW::ColorByGridProcessor::start() BALL::VIEW::ColorProcessor::start() BALL::VIEW::InterpolateColorProcessor::start() BALL::VIEW::ResidueNumberColorProcessor::start() BALL::VIEW::PositionColorProcessor::start() BALL::VIEW::FileObserver::start()
start_action_ BALL::VIEW::FileObserver
start_animation_action_ BALL::VIEW::Scene
START_BENCHMARK benchmark.h
start_log_ BALL::PyInterpreter
start_recording BALL::VIEW::TestFramework
START_SECTION benchmark.h
START_TEST classTest.h
start_time_ BALL::VIEW::DockProgressDialog
START_TIMER benchmark.h
startAccepting BALL::TCPServer
startAnimation BALL::VIEW::Scene
startChildPredicates BALL::GAFFCESParser
startDefinition BALL::VIEW::GLDisplayList
startDocking BALL::VIEW::DockingController
startDriver BALL::VIEW::InputPlugin
started_startup_script_ BALL::VIEW::PyWidget
STARTED_UPDATE BALL::VIEW::RepresentationMessage
startEditorDialog BALL::VIEW::PDBInfoEditorWidget
starting_configuration_ BALL::AssignBondOrderProcessor
startInterpreter BALL::VIEW::PyWidget
startLoop BALL::CIFFile::Item
startOutput BALL::PersistenceManager
startRecording_ BALL::VIEW::EditSingleShortcut
startsWith BALL::LineBasedFile
startTest BALL::VIEW::TestFramework
startup_script_ BALL::VIEW::PyWidget
State BALL::GAFFCESParser
State BALL::CIFFile
State BALL::GAMESSDatFile
State BALL::GAMESSLogFile
State BALL::SmartsParser
State BALL::SmilesParser
State BALL::ExpressionParser
state_ BALL::VIEW::GeometricObjectSelectionMessage
static_members BALL::MOL2File::SetStruct
Statistics BALL::QSAR
Statistics BALL::QSAR::Statistics
status_ BALL::ResidueChecker
STATUS_INSIDE BALL::RSComputer
STATUS_NOT_OK BALL::RSComputer
STATUS_NOT_TESTED BALL::RSComputer
STATUS_OK BALL::RSComputer
STATUS_ON_SURFACE BALL::RSComputer
STATUS_UNKNOWN BALL::RSComputer
std_err_ BALL::QSAR::RegressionValidation
stddev_ BALL::QSAR::SNBModel
step_width_ BALL::RotamerLibrary
stepFourier_ BALL::TFFT1D
stepFourierZ_ BALL::TFFT3D
stepPhys_ BALL::TFFT1D
stepPhysZ_ BALL::TFFT3D
steps_between_saves_ BALL::DCDFile
steps_between_updates_ BALL::VIEW::SimulationThread
stepwiseSelection BALL::QSAR::FeatureSelection
stereo BALL::MOLFile::BondStruct
stereo_ BALL::VIEW::GLRenderer
stereo_camera_ BALL::VIEW::Scene
stereo_care_box BALL::MOLFile::AtomStruct
stereo_left_eye_ BALL::VIEW::Scene
stereo_right_eye_ BALL::VIEW::Scene
STEREO_SETUP BALL::VIEW::RenderSetup
stereo_setup_ BALL::VIEW::RenderSetup
stereoBufferSupportTest BALL::VIEW::Scene
StereoMode BALL::VIEW::GLRenderer
StereoSettingsDialog BALL::VIEW::StereoSettingsDialog
STIBIUM BALL::Element
stick_radius_ BALL::VIEW::AddBallAndStickModel
stickRadiusChanged BALL::VIEW::ModelSettingsDialog
sticks_ BALL::Spectrum
still_to_notify_ BALL::VIEW::RepresentationManager
stl_ BALL::VIEW::ExportGeometryDialog
STLRenderer BALL::VIEW
stop_ BALL::VIEW::SnapshotVisualisationDialog
stop_action_ BALL::VIEW::FileObserver
stop_animation_ BALL::VIEW::Scene
stop_recording BALL::VIEW::TestFramework
stop_script_ BALL::VIEW::PyWidget
stop_simulation_ BALL::VIEW::MainControl
stop_simulation_action_ BALL::VIEW::MainControl
STOP_TIMER benchmark.h
stopAnimation BALL::VIEW::Scene
stopedSimulation BALL::VIEW::MainControl
stopedSimulation_ BALL::VIEW::MainControl
stopRecording_ BALL::VIEW::EditSingleShortcut
stopSimulation BALL::VIEW::MainControl
stopTest BALL::VIEW::TestFramework
store_skipped_records_ BALL::PDBFile
storeColor_ BALL::VIEW::POVRenderer
storeConnections_ BALL::FragmentDB::BuildBondsProcessor
stored_camera_ BALL::VIEW::Scene
stored_s_ BALL::StrangLBFGSMinimizer
stored_y_ BALL::StrangLBFGSMinimizer
storeEvent BALL::VIEW::TestFramework
storeGradientEnergy BALL::EnergyMinimizer
storeOriginalConfiguration_ BALL::AssignBondOrderProcessor
storeRepresentations BALL::VIEW::RepresentationManager
storeScript_ BALL::VIEW::PyWidget
storeViewPoint BALL::VIEW::Scene
stptol_ BALL::LineSearch
strand_color_ BALL::VIEW::SecondaryStructureColorProcessor
strand_height_ BALL::VIEW::AddCartoonModel
strand_number BALL::PDB::RecordSHEET
strand_width_ BALL::VIEW::AddCartoonModel
stream BALL::LogStreamBuf::StreamStruct
stream_ BALL::LogStreamNotifier
STREAM_HEADER BALL::XDRPersistenceManager
stream_list_ BALL::LogStreamBuf
STREAM_TRAILER BALL::XDRPersistenceManager
StreamIterator BALL::LogStream
streams_handled_externally_ BALL::XDRPersistenceManager
StreamStruct BALL::LogStreamBuf
StreamStruct BALL::LogStreamBuf::StreamStruct
Stretch BALL::MMFF94StretchBend
stretch_ BALL::StretchComponent
stretch_bend_energy_ BALL::MMFF94StretchBend
stretch_bends_ BALL::MMFF94StretchBend
stretch_enabled_ BALL::MMFF94StretchBend
stretch_energy_ BALL::MMFF94StretchBend
stretch_i_j BALL::MMFF94StretchBend::StretchBend
stretch_j_k BALL::MMFF94StretchBend::StretchBend
StretchBend BALL::MMFF94StretchBend
stretchbend_enabled_ BALL::MMFF94StretchBend
StretchBendMap BALL::MMFF94StretchBendParameters
stretches_ BALL::MMFF94StretchBend
StretchMap BALL::MMFF94StretchParameters
strict_line_checking_ BALL::PDBFile
String BALL
String2 BALL::PDB
String3 BALL::PDB
String4 BALL::PDB
String40 BALL::PDB
String5 BALL::PDB
string_format BALL::VIEW::PythonHighlighter
string_pattern BALL::VIEW::PythonHighlighter
string_value BALL::JCAMPFile::JCAMPValue
StringEditorWidget BALL::VIEW
StringEditorWidget BALL::VIEW::StringEditorWidget
stringToHSV_ BALL::VIEW::ColorHSV
stringToRGBA_ BALL::VIEW::ColorRGBA
stringToVector3 BALL::VIEW
stringToWildcard_ BALL::GAFFCESParser::CESPredicate
STRONGLY_OVERLAPPING_ATOMS BALL::ResidueChecker
STRONTIUM BALL::Element
Structure BALL::PDB
STRUCTURE_BASED BALL::HybridisationProcessor::Method
structures_ BALL::ConformationSet
subdivideTriangle BALL::VIEW
subdivideTriangle_ BALL::VIEW::GLRenderer
subject_length BALL::NMRStarFile::MonomericPolymer::HomologDB
submission_date BALL::NMRStarFile::EntryInformation
substances_names_ BALL::QSAR::Validation
Substring BALL
substructure BALL::MOL2File::AtomStruct
substructure_name BALL::MOL2File::AtomStruct
substructure_type BALL::MOL2File::SubstructureStruct
substructures_ BALL::MOL2File
SubstructureStruct BALL::MOL2File
successor BALL::RingAnalyser::Ring
suffix_ BALL::VIEW::DownloadPDBFile
SULFUR BALL::Element
SULPHUR BALL::Element
summary_ BALL::SecondaryStructureProcessor
supportsNamingScheme BALL::Peptides::NameConverter
supportsPseudoAtomNamingScheme BALL::Peptides::NameConverter
Surface BALL
surface_tension_ BALL::NonpolarSolvation
surface_type_ BALL::SurfaceProcessor
SurfaceProcessor BALL::SurfaceProcessor
SUSPECT_BOND_LENGTHS BALL::ResidueChecker
SV BALL::QSAR::LibsvmModel::svm_model
sv_coef BALL::QSAR::LibsvmModel::svm_model
svm_model BALL::QSAR::LibsvmModel
svm_train_result_ BALL::QSAR::LibsvmModel
SVMModel BALL::QSAR
SVMModel BALL::QSAR::SVMModel
SVRModel BALL::QSAR
SVRModel BALL::QSAR::SVRModel
swap
BALL::BaseIterator::swap() BALL::Composite::swap() BALL::ConstForwardIterator::swap() BALL::ForwardIterator::swap() BALL::PropertyManager::swap() BALL::Selectable::swap() BALL::HashSet::swap() BALL::List::swap() BALL::TRegularData1D::swap() BALL::TRegularData2D::swap() BALL::TRegularData3D::swap() BALL::String::swap() BALL::StringHashMap::swap() BALL::PDBRecords::swap() BALL::Atom::swap() BALL::AtomContainer::swap() BALL::Bond::swap() BALL::Chain::swap() BALL::Molecule::swap() BALL::NucleicAcid::swap() BALL::Nucleotide::swap() BALL::PDBAtom::swap() BALL::Protein::swap() BALL::Residue::swap() BALL::SecondaryStructure::swap() BALL::TAngle::swap() BALL::TBox3::swap() BALL::TCircle3::swap() BALL::BaseFilterIterator::swap() BALL::BaseIterator::swap() BALL::ConstForwardFilterIterator::swap() BALL::ForwardFilterIterator::swap() BALL::ConstForwardIterator::swap() BALL::ForwardIterator::swap() BALL::TLine3::swap() BALL::TMatrix4x4::swap() BALL::TPlane3::swap() BALL::TQuaternion::swap() BALL::TSimpleBox3::swap() BALL::TSphere3::swap() BALL::TVector3::swap() BALL::TVector4::swap() BALL::VIEW::ColorExtension2::swap() BALL::VIEW::MultiColorExtension::swap() BALL::VIEW::ColorHSV::swap() BALL::VIEW::ColorRGBA::swap() BALL::VIEW::ColorUnit::swap() BALL::VIEW::ColorUnitHue::swap() BALL::VIEW::Vertex::swap() BALL::VIEW::Vertex2::swap() BALL::VIEW::GeometricObject::swap() BALL::VIEW::Disc::swap() BALL::VIEW::Label::swap() BALL::VIEW::Line::swap() BALL::VIEW::Mesh::swap() BALL::VIEW::Point::swap() BALL::VIEW::Sphere::swap() BALL::VIEW::Tube::swap() BALL::VIEW::TwoColoredLine::swap() BALL::VIEW::TwoColoredTube::swap()
swap_endian_ BALL::BinaryFileAdaptor
swap_side_by_side_stereo_ BALL::VIEW::Stage
swapLastBond_ BALL::Atom
swapSideBySideStereo BALL::VIEW::Stage
swidthf1_ BALL::Bruker2DFile
swidthf2_ BALL::Bruker2DFile
switch_grid_ BALL::VIEW::Scene
switch_move BALL::VIEW::TestFramework
switchRecordMove BALL::VIEW::TestFramework
switchShowGrid BALL::VIEW::Scene
switchShowSecondaryStructure BALL::VIEW::MolecularControl
switchShowWidget BALL::VIEW::Scene
switchString BALL::LineBasedFile
switchToLastMode BALL::VIEW::Scene
sym_size BALL::TRRFile::TRRHeader
symbol_ BALL::Element
symbol_to_element_ BALL::PTE_
SymbolToElement BALL::PTE_
symmetry_group_ BALL::GAMESSDatFile
symmetry_operator BALL::PDB::RecordSSBOND
SymmetryOperator BALL::PDB
SyncClippingPlanesMessage BALL::VIEW::SyncClippingPlanesMessage
synchronize_ BALL::Directory
syntax_tree_ BALL::ExpressionParser
SyntaxTree BALL::ExpressionParser
sys_path_ BALL::PyInterpreter
System BALL
system1_ BALL::DockingAlgorithm
system2_ BALL::DockingAlgorithm
system_backup_a_ BALL::GeometricFit
system_backup_b_ BALL::GeometricFit
system_molecular_weight BALL::NMRStarFile::MolecularSystem
system_name BALL::NMRStarFile::MolecularSystem
system_oligomer_state BALL::NMRStarFile::MolecularSystem
system_origin_ BALL::VIEW::Scene
system_paramagnetic BALL::NMRStarFile::MolecularSystem
system_physical_state BALL::NMRStarFile::MolecularSystem
system_thiol_state BALL::NMRStarFile::MolecularSystem
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