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D_1_ BALL::ConjugateGradientMinimizer
D_4_ BALL::ConjugateGradientMinimizer
dashed_bonds_ BALL::VIEW::AddBallAndStickModel
dashedBondsEnabled BALL::VIEW::AddBallAndStickModel
dat_ BALL::Bruker2DFile
Data BALL::CharmmEEF1
Data BALL::LennardJones
Data BALL::CosineTorsion
Data BALL::Potential1210
Data BALL::QuadraticAngleBend
Data BALL::QuadraticBondStretch
Data BALL::QuadraticImproperTorsion
Data BALL::ResidueTorsions
database BALL::PDB::RecordSEQADV
Datablock BALL::CIFFile
datablocks_ BALL::CIFFile
datablocks_hash_ BALL::CIFFile
DataContainer BALL::HashGridBox3
Datacontent BALL::CIFFile
dataitem BALL::CIFFile::Datacontent
DataIterator BALL::HashGridBox3
DataIteratorPosition BALL::HashGridBox3
DataIteratorTraits BALL::HashGridBox3
Dataset BALL::VIEW
dataset_ BALL::VIEW::DatasetMessage
dataset_to_item_ BALL::VIEW::DatasetController
dataset_type_ BALL::VIEW::DatasetMessage
DatasetControl BALL::VIEW
DatasetController BALL::VIEW
DatasetMessage BALL::VIEW
dataTransferProgress BALL::PubChemDownloader
db_ BALL::DNAMutator
db_id_code BALL::PDB::RecordSEQADV
db_res BALL::PDB::RecordSEQADV
db_seq BALL::PDB::RecordSEQADV
dc_ BALL::MMFF94NonBonded
dcd_file_ BALL::VIEW::SimulationThread
DCDFile BALL
DEBYE BALL::FDPB::Boundary
decodeBase64 BALL::String
Default BALL::FDPB
Default BALL::RotationalEntropyLoss
Default BALL::ScoringFunction
Default BALL::AromaticityProcessor
Default BALL::AssignBondOrderProcessor
Default BALL::ShiftedLVMMMinimizer
Default BALL::SDGenerator
Default BALL::GAFFTypeProcessor
Default BALL::SideChainPlacementProcessor
Default BALL::GeneralizedBornModel
Default BALL::CharmmFF
Default BALL::SLICKEnergy
Default BALL::SLICKScore
Default BALL::SnapShotManager
Default BALL::GeometricFit
Default BALL::StrangLBFGSMinimizer
Default BALL::UhligCavFreeEnergyProcessor
Default BALL::VanDerWaals
Default BALL::HybridisationProcessor
Default BALL::HBondProcessor
Default BALL::AmberFF
Default BALL::CHPI
Default BALL::HydrogenBond
Default BALL::Lipophilic
Default BALL::MMFF94
Default BALL::MolecularDynamics
Default BALL::BindingPocketProcessor
Default BALL::NonpolarSolvation
Default BALL::NumericalSAS
Default BALL::Pair6_12InteractionEnergyProcessor
Default BALL::BuildBondsProcessor
Default BALL::Pair6_12RDFIntegrator
Default BALL::PairExpInteractionEnergyProcessor
Default BALL::PairExpRDFIntegrator
Default BALL::PCMCavFreeEnergyProcessor
Default BALL::VIEW::SDWidget
Default BALL::ConjugateGradientMinimizer
Default BALL::PDBFile
Default BALL::Peptides::NameConverter
Default BALL::AromaticRingStacking
Default BALL::PeriodicBoundary
Default BALL::PierottiCavFreeEnergyProcessor
Default BALL::BuriedPolar
Default BALL::PolarSolvation
Default BALL::ElectrostaticPotentialCalculator
Default BALL::EmpiricalHSShiftProcessor
Default BALL::CrystalInfo
Default BALL::EnergyMinimizer
Default BALL::ReissCavFreeEnergyProcessor
Default BALL::RingPerceptionProcessor
DEFAULT_COLOR_FOR_OUTSIDE_COLORS BALL::VIEW::InterpolateColorProcessor
default_communicator_ BALL::MPISupport
default_correlation_cutoff BALL::QSAR::Registry
DEFAULT_FRAGMENT_DB BALL::RotamerLibrary
default_gridsearch_par1_start BALL::QSAR::Registry
default_gridsearch_par2_start BALL::QSAR::Registry
default_gridsearch_recursion BALL::QSAR::Registry
default_gridsearch_steps BALL::QSAR::Registry
default_gridsearch_stepwidth BALL::QSAR::Registry
default_hydrogen_target_nucleus_factor_ BALL::HaighMallionShiftProcessor
default_k BALL::QSAR::Registry
default_kernel_par1 BALL::QSAR::Registry
default_kernel_par2 BALL::QSAR::Registry
DEFAULT_LIBRARY BALL::RotamerLibrary
default_lights_ BALL::VIEW::LightSettings
default_nested_folds BALL::QSAR::Registry
default_no_boostrap_samples BALL::QSAR::Registry
default_no_opt_steps_ BALL::QSAR::Model
default_no_permutations BALL::QSAR::Registry
default_num_steps_ BALL::DNAMutator
default_page_ BALL::VIEW::HelpViewer
default_peak_ BALL::Experiment
DEFAULT_PORT client.h
DEFAULT_PROCESSOR BALL::Composite
default_rbf_par BALL::QSAR::Registry
default_standard_ BALL::FragmentDB
DEFAULT_UNARY_PREDICATE BALL::Composite
default_valdition_fraction BALL::QSAR::Registry
default_values_ BALL::VIEW::PreferencesEntry
default_visible_ BALL::VIEW::ModularWidget
defaultAssign_ BALL::Enumerator
defaultsPressed BALL::VIEW::LightSettings
DEGREE BALL::SmartsParser::SPAtom
degree_ BALL::PiecewisePolynomial
delegate_ BALL::VIEW::HotkeyTable
deletable_ BALL::VIEW::Message
delete_action_ BALL::VIEW::MainControl
delete_buffer_ BALL::LogStream
DELETE_ENTRY BALL::VIEW::MolecularControl
delete_force_field_ BALL::ForceFieldEvaluation
delete_id_ BALL::VIEW::MolecularControl
deleteAtom_ BALL::VIEW::EditableScene
deleteBond_ BALL::VIEW::EditableScene
deleteBuckets_ BALL::HashSet
deleteChildrenList_ BALL::Composite
deleteClicked BALL::VIEW::MainControl
deleteColumn_ BALL::VIEW::DockResultDialog
deleted_properties_ BALL::VIEW::PropertyEditor
deleteDatasets BALL::VIEW::DatasetController
deleteDescriptorIDs BALL::QSAR::Model
deleteEdge_ BALL::NodeItem
deleteEntry BALL::ResourceEntry
deleteEntryArray BALL::ResourceEntry
deleteIsolatedEdges BALL::TriangulatedSurface
deleteIsolatedPoints BALL::TriangulatedSurface
deleteLine BALL::INIFile
deleteNode_ BALL::HashSet
deleteOverestimatedBonds_ BALL::BuildBondsProcessor
deleteProperty BALL::VIEW::PropEditorWidget
deleteProperty_ BALL::VIEW::PropertyEditor
deleteRotamer BALL::ResidueRotamerSet
deleteRotamers BALL::ResidueRotamerSet
deleteScoring BALL::DockResult
deleteSection BALL::INIFile
deleteSimilarFaces BALL::ReducedSurface
deleteSmallSingularToricFace BALL::SolventExcludedSurface
deleteSmallToricFace BALL::SolventExcludedSurface
deleteTexture BALL::VIEW::GLRenderWindow
deleteVariants BALL::Enumerator
DELIMITER_TAG BALL::KCFFile
DELOCALIZED_BOND BALL::GAFFCESParser::APSMatcher
DELOCALIZED_BOND_TO_PARENT BALL::GAFFCESParser::APSMatcher
delta_r BALL::MMFF94StretchBend::Stretch
delta_theta BALL::MMFF94StretchBend::Bend
demo_action_ BALL::VIEW::DemoTutorialDialog
demo_mode_ BALL::VIEW::DemoTutorialDialog
DemoTutorialDialog BALL::VIEW::DemoTutorialDialog
DemoTutorialDialog BALL::VIEW
Density BALL
DEPOSITED BALL::SDGenerator
deposition_date BALL::PDB::RecordHEADER
depositPFU_ BALL::SDGenerator
DEPTH_CHANNEL BALL::VIEW::ChannelFormat
depth_vector_ BALL::TBox3
Descriptor BALL
descriptor_IDs_ BALL::QSAR::Model
descriptor_matrix BALL::QSAR::RegressionValidation::BackupData
descriptor_names_ BALL::QSAR::Model
descriptor_source_model BALL::QSAR::ModelConfiguration
deselect_action_ BALL::VIEW::MolecularControl
deselect_id_ BALL::VIEW::MolecularControl
deselectCompositeRecursive BALL::VIEW::MainControl
DeselectControlsMessage BALL::VIEW::DeselectControlsMessage
DESELECTED_COMPOSITE BALL::VIEW::CompositeMessage
deselectOtherControls_ BALL::VIEW::GenericControl
desolv_ligand_ BALL::PolarSolvation
desolv_protein_ BALL::PolarSolvation
destroy_ BALL::GeometricFit
destroyBond BALL::Atom
destroyGrids BALL::FDPB
desynchronize_ BALL::Directory
determineSelection_ BALL::Composite
deviation_sigma_ BALL::CCP4File
device_ BALL::VIEW::DeviceEvent
DeviceEvent BALL::VIEW::DeviceEvent
DeviceEvent BALL::VIEW
dfs BALL::RingFinder
DFSBCC_ BALL::RingPerceptionProcessor
dG_free BALL::CharmmEEF1::Values
dG_free_ BALL::CharmmEEF1
dG_ref BALL::CharmmEEF1::Values
dG_ref_ BALL::CharmmEEF1
dgeev_ lapack.h
dgesdd_ lapack.h
dH_ref BALL::CharmmEEF1::Values
dH_ref_ BALL::CharmmEEF1
dialogButtonClicked_ BALL::VIEW::AssignBondOrderConfigurationDialog
dialogButtonsClicked_ BALL::VIEW::Preferences
dictionary_type BALL::MOL2File::SubstructureStruct
DielectricSmoothing BALL::FDPB
diffEquations BALL::QSAR
difference BALL::Spectrum
differenceSpectrum BALL::Spectrum
DifferenceType BALL::PDBRecords
diffuse_ BALL::VIEW::Stage
dimension_x_ BALL::HashGrid3
dimension_y_ BALL::HashGrid3
dimension_z_ BALL::HashGrid3
DIPOLE BALL::FDPB::Boundary
dir_ BALL::Directory
DIRECT_RENDERING BALL::VIEW::GLRenderer
DIRECTIONAL BALL::VIEW::LightSource
Directory BALL
directory_path_ BALL::Directory
directorySelectionChanged BALL::VIEW::PluginDialog
dirent_ BALL::Directory
disable_output_ BALL::LogStream
disableAtoms BALL::SDFile
disabled BALL::LogStreamBuf::StreamStruct
disableLoggingToFile BALL::VIEW::MainControl
disableOutput BALL::LogStream
disableVelocityStorage BALL::DCDFile
Disc BALL::VIEW
DISCRETE__CHI BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
DISCRETE__DISCRETE BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
DISCRETE__REAL BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
discretization_steps_ BALL::QSAR::NBModel
discretizeFeatures BALL::QSAR::ClassificationModel
discretizeTestDataFeatures BALL::QSAR::ClassificationModel
DISPLAY BALL::VIEW::MainControl
DISPLAY_ANIMATION BALL::VIEW::MainControl
DISPLAY_CREATE BALL::VIEW::MainControl
display_lists_ BALL::VIEW::GLRenderer
display_lists_index_ BALL::VIEW::GLRenderer
DISPLAY_LISTS_RENDERING BALL::VIEW::GLRenderer
DISPLAY_STEREO BALL::VIEW::MainControl
DISPLAY_VIEWPOINT BALL::VIEW::MainControl
DISPLAYLIST_NOT_DEFINED BALL::VIEW::GLDisplayList
DisplayListHashMap BALL::VIEW::GLRenderer
DisplayListRedeclaration BALL::VIEW::GLDisplayList::DisplayListRedeclaration
DisplayListRedeclaration BALL::VIEW::GLDisplayList
DisplayProperties BALL::VIEW
dist BALL::FragmentDB::BuildBondsProcessor::Connection
distance_ BALL::VIEW::AtomDistanceColorProcessor
distance_action_ BALL::VIEW::MolecularControl
distance_tolerance_ BALL::CHPI
Division BALL
DivisionByZero BALL::Exception
DivisionByZero BALL::Exception::DivisionByZero
DL GAFFTypeProcessor.h
dl_ BALL::PubChemDownloader
DLArrayHelper BALL::SimpleDownloaderHelper
DLArrayHelper BALL::SimpleDownloaderHelper::DLArrayHelper
DLHelper BALL::SimpleDownloaderHelper
DLHelper BALL::SimpleDownloaderHelper::DLHelper
DLThread BALL::SimpleDownloaderHelper
DNA_base_radius_ BALL::VIEW::AddCartoonModel
DNA_helix_radius_ BALL::VIEW::AddCartoonModel
DNA_ladder_radius_ BALL::VIEW::AddCartoonModel
DNAMutator BALL
DNAMutator BALL::DNAMutator
do_resize_ BALL::VIEW::RenderSetup
dock_dialog_ BALL::VIEW::DockingController
dock_res_ BALL::VIEW::DockResultDialog
dock_result_dialog_ BALL::VIEW::DockingController
DockDialog BALL::VIEW
docking_algorithm_ BALL::DockResult
docking_options_ BALL::DockResult
docking_partner1_ BALL::VIEW::DockDialog
docking_partner2_ BALL::VIEW::DockDialog
DockingController BALL::VIEW
DockingThread BALL::VIEW
DockingThread BALL::VIEW::DockingThread
DockProgressDialog BALL::VIEW
DockResult BALL
DockResultDialog BALL::VIEW
DockWidget BALL::VIEW
docu_entries_ BALL::VIEW::HelpViewer
doMatch_ BALL::FragmentDB::NormalizeNamesProcessor
donor_ BALL::HBondProcessor::HBond
donor_acceptor BALL::MMFF94VDWParameters::VDWEntry
donor_is_hydrogen_ BALL::HBondProcessor::HBond
donor_occupied_ BALL::HBondShiftProcessor
donorIsHydrogen BALL::HBondProcessor::HBond
doPreTranslation_ BALL::GeometricFit
dot_size_ BALL::VIEW::GridVisualisation
DOTS BALL::VIEW::GridVisualisation
DOUBLE_BOND_TO_PARENT BALL::GAFFCESParser::APSMatcher
DoubleEditorWidget BALL::VIEW::DoubleEditorWidget
DoubleEditorWidget BALL::VIEW
DoubleReal BALL
download_ BALL::SimpleDownloader
DownloadElectronDensity BALL::VIEW::DownloadElectronDensity
downloader_ BALL::VIEW::PubChemDialog
DownloadHelper BALL::VIEW::PubChemDialogPrivate
DownloadHelper BALL::VIEW::PubChemDialogPrivate::DownloadHelper
DownloadPDBFile BALL::VIEW::DownloadPDBFile
DownloadPDBFile BALL::VIEW
downloadSDF BALL::PubChemDownloader
downloadToBuffer BALL::SimpleDownloader
downloadToFile BALL::SimpleDownloader
downwardClicked BALL::VIEW::DockResultDialog
drag_ BALL::VIEW::SnapshotVisualisationDialog
DragLogView BALL::VIEW
DragLogView BALL::VIEW::DragLogView
draw_box BALL::VIEW::GridVisualisation
draw_DNA_as_ladder_ BALL::VIEW::AddCartoonModel
draw_ribbon_ BALL::VIEW::AddCartoonModel
drawBuffered BALL::VIEW::GLRenderer
drawDNAAsLadderModel BALL::VIEW::AddCartoonModel
drawed_mesh_ BALL::VIEW::GLRenderer
drawed_other_object_ BALL::VIEW::GLRenderer
drawFrame_ BALL::VIEW::SDWidget
DRAWING_MODE_DOTS BALL::VIEW
DRAWING_MODE_SOLID BALL::VIEW
DRAWING_MODE_TOON BALL::VIEW
DrawingMode BALL::VIEW
DrawingPrecision BALL::VIEW
drawRiboseAtoms_ BALL::VIEW::AddCartoonModel
drawShape BALL::VIEW::CanvasWidget::PixmapItem
drawStrand_ BALL::VIEW::AddCartoonModel
DSN6File BALL
dspevd_ lapack.h
dual_stereo_action_ BALL::VIEW::Scene
DUAL_VIEW_DIFFERENT_DISPLAY_STEREO BALL::VIEW::GLRenderer
DUAL_VIEW_STEREO BALL::VIEW::GLRenderer
DUBNIUM BALL::Element
dummy BALL::Visitor
dummy_indices_ BALL::CIFFile::Datablock
dummy_monomeric_polymer_ BALL::NMRStarFile
dummy_NMR_spectrometer_ BALL::NMRStarFile
dummy_protein_ BALL::VIEW::AddBackboneModel
dummy_residue BALL::VIEW::ResidueNameColorProcessor
dummy_sample_ BALL::NMRStarFile
dummy_sample_condition_ BALL::NMRStarFile
dummy_saveframes_ BALL::CIFFile::Datablock
dummy_shift_reference_set_ BALL::NMRStarFile
dummySlot BALL::VIEW::Scene
dump
BALL::LogStreamBuf::dump() BALL::Client::dump() BALL::Composite::dump() BALL::Embeddable::dump() BALL::Object::dump() BALL::PropertyManager::dump() BALL::Selectable::dump() BALL::HashGridBox3::dump() BALL::HashGrid3::dump() BALL::HashSet::dump() BALL::Options::dump() BALL::RegularExpression::dump() BALL::String::dump() BALL::Substring::dump() BALL::ResourceEntry::dump() BALL::ResourceFile::dump() BALL::Atom::dump() BALL::Atom::BondIteratorTraits::dump() BALL::AtomContainer::dump() BALL::Bond::dump() BALL::Chain::dump() BALL::ExpressionParser::SyntaxTree::dump() BALL::ExpressionTree::dump() BALL::Fragment::dump() BALL::Molecule::dump() BALL::NucleicAcid::dump() BALL::Nucleotide::dump() BALL::PDBAtom::dump() BALL::Protein::dump() BALL::Residue::dump() BALL::SecondaryStructure::dump() BALL::ConnectedToPredicate::dump() const BALL::ConnectedToPredicate::dump(const CTPNode *current) const BALL::TAngle::dump() BALL::TBox3::dump() BALL::TCircle3::dump() BALL::ColumnIteratorTraits::dump() BALL::DiagonalIteratorTraits::dump() BALL::ElementColumnIteratorTraits::dump() BALL::ElementRowIteratorTraits::dump() BALL::RowIteratorTraits::dump() BALL::VectorIteratorTraits::dump() BALL::TLine3::dump() BALL::TMatrix4x4::dump() BALL::PiecewiseFunction::dump() BALL::PiecewisePolynomial::dump() BALL::TPlane3::dump() BALL::TQuaternion::dump() BALL::TSimpleBox3::dump() BALL::TSphere3::dump() BALL::TVector2::dump() BALL::TVector3::dump() BALL::TVector4::dump() BALL::RuleEvaluator::dump() BALL::RuleProcessor::dump() BALL::CHPI::AromaticRing::dump() BALL::CHPI::CHGroup::dump() BALL::Pair6_12RDFIntegrator::dump() BALL::PairExpRDFIntegrator::dump() BALL::Kekuliser::dump() BALL::RadialDistributionFunction::dump() BALL::SmartsMatcher::RecStruct_::dump() BALL::Timer::dump() BALL::VIEW::ColorExtension2::dump() BALL::VIEW::MultiColorExtension::dump() BALL::VIEW::ColorHSV::dump() BALL::VIEW::ColorMap::dump() BALL::VIEW::ColorRGBA::dump() BALL::VIEW::ColorUnit::dump() BALL::VIEW::ColorUnitHue::dump() BALL::VIEW::Dataset::dump() BALL::VIEW::Vertex::dump() BALL::VIEW::Vertex2::dump() BALL::VIEW::CompositeManager::dump() BALL::VIEW::ConnectionObject::dump() BALL::VIEW::GeometricObject::dump() BALL::VIEW::MainControl::dump() BALL::VIEW::ModularWidget::dump() BALL::VIEW::PreferencesEntry::dump() BALL::VIEW::Representation::dump() BALL::VIEW::RepresentationManager::dump() BALL::VIEW::ServerWidget::dump() BALL::VIEW::LightSource::dump() BALL::VIEW::Camera::dump() BALL::VIEW::Stage::dump() BALL::VIEW::AtomBondModelBaseProcessor::dump() BALL::VIEW::AddBackboneModel::dump() BALL::VIEW::AddBallAndStickModel::dump() BALL::VIEW::ColorProcessor::dump() BALL::VIEW::AddLineModel::dump() BALL::VIEW::ModelProcessor::dump() BALL::VIEW::AddSurfaceModel::dump() BALL::VIEW::AddVanDerWaalsModel::dump() BALL::VIEW::Box::dump() BALL::VIEW::Disc::dump() BALL::VIEW::Label::dump() BALL::VIEW::Line::dump() BALL::VIEW::Mesh::dump() BALL::VIEW::MultiLine::dump() BALL::VIEW::Point::dump() BALL::VIEW::SimpleBox::dump() BALL::VIEW::Sphere::dump() BALL::VIEW::Tube::dump() BALL::VIEW::TwoColoredLine::dump() BALL::VIEW::TwoColoredTube::dump() BALL::VIEW::GLDisplayList::dump() BALL::VIEW::GLRenderer::dump() BALL::VIEW::PyWidget::dump() BALL::VIEW::Scene::dump()
dumpTree BALL::SmartsParser
duplicate BALL::VIEW::GeometricControl
DUPLICATE_ATOM_NAMES BALL::ResidueChecker
duplicateKeyCheckEnabled BALL::INIFile
duplicateProperty BALL::VIEW::PropEditorWidget
Dy BALL::Element
dynamic_rule BALL::MOL2File::SetStruct
DYSPROSIUM BALL::Element
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