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C_atom_ BALL::CHPI::CHGroup
C_BACKBONE BALL::ShiftModel1D
c_factor_ BALL::BindingPocketProcessor
Ca BALL::Element
CADMIUM BALL::Element
CAESIUM BALL::Element
calcConjugate_ BALL::GeometricFit
CALCIUM BALL::Element
calculate_hbonds_id_ BALL::VIEW::MolecularStructure
calculate_ramachandran_ BALL::VIEW::MolecularStructure
calculate_RMSD_id_ BALL::VIEW::MolecularStructure
calculate_ss_id_ BALL::VIEW::MolecularStructure
calculateAbsoluteCoordinates BALL::VIEW::Stage
calculateAromaticSystems_ BALL::Kekuliser
calculateAverageMCC BALL::QSAR::ClassificationValidation
calculateAverageSensitivity BALL::QSAR::ClassificationValidation
calculateBendEmpiricalForceConstant BALL::MMFF94StretchBend
calculateBendEmpiricalReferenceAngle BALL::MMFF94StretchBend
calculateBornRadii_ BALL::GeneralizedBornModel
calculateCoefficientStdErrors BALL::QSAR::RegressionValidation
calculateComplementaryBases_ BALL::VIEW::AddCartoonModel
calculateCreationEnergy_ BALL::GeneralizedBornModel
calculated_ BALL::MMFF94VDWParameters
calculateDefaultBijection BALL::StructureMapper
calculateDeltas_ BALL::MMFF94StretchBend
calculateDistances BALL::VIEW::AtomDistanceColorProcessor
calculateDistanceScores_ BALL::Kekuliser
calculateEigenvectors BALL::QSAR::PCRModel
calculateEnergy BALL::GeneralizedBornModel
calculateEuclDistanceMatrix BALL::QSAR::ALLModel
calculateFactors BALL::MicroCanonicalMD
calculateFactors_ BALL::CanonicalMD
calculateFDPB BALL::VIEW::MolecularStructure
CalculateFDPBThread BALL::VIEW
calculateForceFieldEnergy BALL::VIEW::MolecularStructure
calculateFragmentBijection BALL::StructureMapper
calculateGuidePoints_ BALL::VIEW::AddBackboneModel
calculateHBonds BALL::VIEW::MolecularStructure
calculateHeuristic_ BALL::MMFF94Torsion
calculateHSV_ BALL::VIEW::ColorHSV
calculateIncludedVertices_ BALL::VIEW::ModifyRepresentationDialog
calculateKernelVector BALL::QSAR::Kernel
calculateKineticEnergy_ BALL::SnapShotManager
calculateLinePoints_ BALL::VIEW::FieldLineCreator
calculateMatrices_ BALL::CrystalInfo
calculateMinimumImage BALL::MolmecSupport
calculateMinSpacing BALL::HashGrid3
calculateNonBondedAtomPairs BALL::MolmecSupport
calculateOverallAccuracy BALL::QSAR::ClassificationValidation
calculateOverallMCC BALL::QSAR::ClassificationValidation
calculatePEOE BALL::PartialChargeProcessor
calculateQOF BALL::QSAR::RegressionValidation
calculateRamachandranPlot BALL::VIEW::MolecularStructure
calculateRange BALL::PiecewiseFunction
calculateRelativeCoordinates BALL::VIEW::Stage
calculateRGB_ BALL::VIEW::ColorHSV
calculateRibbonEllipse_ BALL::VIEW::AddBackboneModel
calculateRibbonPoints_ BALL::VIEW::AddBackboneModel
calculateSBTIJK BALL::MMFF94StretchBend
calculateSecondaryStructure BALL::VIEW::MolecularStructure
calculateSolvationEnergy BALL::GeneralizedBornModel
calculateSSSR BALL::RingPerceptionProcessor
calculateStretchConstant BALL::MMFF94StretchBend
calculateStretchR0 BALL::MMFF94StretchBend
calculateT_ BALL::BindingPocketProcessor
calculateTDR BALL::QSAR::ClassificationValidation
calculateTransferEnergy_ BALL::GeneralizedBornModel
calculateTransformation BALL::StructureMapper
calculateTubePoints_ BALL::VIEW::AddBackboneModel
calculateVDWEnergy_ BALL::VanDerWaals
calculateVectors_ BALL::VIEW::Camera
calculateWeightedSensitivity BALL::QSAR::ClassificationValidation
calculateXX BALL::QSAR::ALLModel
calculateXY BALL::QSAR::ALLModel
CALCULATION__BOEHM BALL::RotationalEntropyLoss
CALCULATION__COULOMB BALL::PolarSolvation
CALCULATION__EEF1 BALL::PolarSolvation
CALCULATION__FRESNO BALL::PolarSolvation
CALCULATION__FROZEN_GLYCOSIDIC_BONDS BALL::RotationalEntropyLoss
CALCULATION__FULL_CYCLE BALL::PolarSolvation
CALCULATION__FULL_CYCLE_FOCUSED BALL::PolarSolvation
CALCULATION__FULL_LJ_POTENTIAL BALL::VanDerWaals
CALCULATION__FULL_SLICK BALL::PolarSolvation
CALCULATION__GLYCOSIDIC_BONDS BALL::RotationalEntropyLoss
CALCULATION__GLYCOSIDIC_CONTRIBUTION BALL::RotationalEntropyLoss
CALCULATION__NONE BALL::NonpolarSolvation
CALCULATION__ORIGINAL BALL::RotationalEntropyLoss
CALCULATION__PCM BALL::NonpolarSolvation
CALCULATION__UHLIG BALL::NonpolarSolvation
CALCULATION__VDW_INTERACTION BALL::NonpolarSolvation
CALCULATION__VDW_SOLVENT BALL::NonpolarSolvation
CALIFORNIUM BALL::Element
call_time_map_ BALL::SMARTSPredicate
caller_ BALL::SimpleDownloaderHelper::BasicHelper
Camera BALL::VIEW
CAMERA__CENTER BALL::VIEW::MolecularControl
cancel_ BALL::VIEW::SnapshotVisualisationDialog
cancel_animation_action_ BALL::VIEW::Scene
candidates BALL::BindingPocketProcessor
candidates_grid_ BALL::BindingPocketProcessor
CannotWrite BALL::File
CannotWrite BALL::File::CannotWrite
canonizePath BALL::FileSystem
canvas_ BALL::VIEW::CanvasWidget
CanvasWidget BALL::VIEW
cap_ BALL::VIEW::ClippingPlane
capacity BALL::PDBRecords
capacity_ BALL::HashSet
capping_color_ BALL::VIEW::ClippingPlane
cappingColorPressed BALL::VIEW::StageSettings
cappingEnabled BALL::VIEW::ClippingPlane
CAPTURE_OUTPUT_LEVEL classTest.h
CARBON BALL::Element
CARBONEUM BALL::Element
carbonyl_influences_amide_field_ BALL::EFShiftProcessor
care_for_SS_ BALL::VIEW::AddBackboneModel
carlsonEllipticalIntegral1_ BALL::JohnsonBoveyShiftProcessor
carlsonEllipticalIntegral2_ BALL::JohnsonBoveyShiftProcessor
cart2frac_ BALL::CrystalInfo
cartoonDNABaseRadiusChanged BALL::VIEW::ModelSettingsDialog
cartoonDNAHelixRadiusChanged BALL::VIEW::ModelSettingsDialog
cartoonDNALadderRadiusChanged BALL::VIEW::ModelSettingsDialog
cartoonHelixRadiusChanged BALL::VIEW::ModelSettingsDialog
cartoonStrandArrowWidthChanged BALL::VIEW::ModelSettingsDialog
cartoonStrandHeightChanged BALL::VIEW::ModelSettingsDialog
cartoonStrandWidthChanged BALL::VIEW::ModelSettingsDialog
cartoonTubeRadiusChanged BALL::VIEW::ModelSettingsDialog
CASE_INSENSITIVE BALL::String
CASE_SENSITIVE BALL::String
castTo BALL::RTTI
category BALL::CIFFile::SaveFrame
cation BALL::MMFF94AtomTyper::AromaticType
cation_atoms_ BALL::MMFF94AtomTyper
cause_ BALL::VIEW::ButtonEvent
cblas_caxpy cblas.h
cblas_ccopy cblas.h
cblas_cdotc_sub cblas.h
cblas_cdotu_sub cblas.h
cblas_cgbmv cblas.h
cblas_cgemm cblas.h
cblas_cgemv cblas.h
cblas_cgerc cblas.h
cblas_cgeru cblas.h
cblas_chbmv cblas.h
cblas_chemm cblas.h
cblas_chemv cblas.h
cblas_cher cblas.h
cblas_cher2 cblas.h
cblas_cher2k cblas.h
cblas_cherk cblas.h
cblas_chpmv cblas.h
cblas_chpr cblas.h
cblas_chpr2 cblas.h
cblas_cscal cblas.h
cblas_csscal cblas.h
cblas_cswap cblas.h
cblas_csymm cblas.h
cblas_csyr2k cblas.h
cblas_csyrk cblas.h
cblas_ctbmv cblas.h
cblas_ctbsv cblas.h
cblas_ctpmv cblas.h
cblas_ctpsv cblas.h
cblas_ctrmm cblas.h
cblas_ctrmv cblas.h
cblas_ctrsm cblas.h
cblas_ctrsv cblas.h
cblas_dasum cblas.h
cblas_daxpy cblas.h
cblas_dcopy cblas.h
cblas_ddot cblas.h
cblas_dgbmv cblas.h
cblas_dgemm cblas.h
cblas_dgemv cblas.h
cblas_dger cblas.h
CBLAS_DIAG cblas.h
cblas_dnrm2 cblas.h
cblas_drot cblas.h
cblas_drotg cblas.h
cblas_drotm cblas.h
cblas_drotmg cblas.h
cblas_dsbmv cblas.h
cblas_dscal cblas.h
cblas_dsdot cblas.h
cblas_dspmv cblas.h
cblas_dspr cblas.h
cblas_dspr2 cblas.h
cblas_dswap cblas.h
cblas_dsymm cblas.h
cblas_dsymv cblas.h
cblas_dsyr cblas.h
cblas_dsyr2 cblas.h
cblas_dsyr2k cblas.h
cblas_dsyrk cblas.h
cblas_dtbmv cblas.h
cblas_dtbsv cblas.h
cblas_dtpmv cblas.h
cblas_dtpsv cblas.h
cblas_dtrmm cblas.h
cblas_dtrmv cblas.h
cblas_dtrsm cblas.h
cblas_dtrsv cblas.h
cblas_dzasum cblas.h
cblas_dznrm2 cblas.h
cblas_icamax cblas.h
cblas_idamax cblas.h
CBLAS_INDEX cblas.h
cblas_isamax cblas.h
cblas_izamax cblas.h
CBLAS_ORDER cblas.h
cblas_sasum cblas.h
cblas_saxpy cblas.h
cblas_scasum cblas.h
cblas_scnrm2 cblas.h
cblas_scopy cblas.h
cblas_sdot cblas.h
cblas_sdsdot cblas.h
cblas_sgbmv cblas.h
cblas_sgemm cblas.h
cblas_sgemv cblas.h
cblas_sger cblas.h
CBLAS_SIDE cblas.h
cblas_snrm2 cblas.h
cblas_srot cblas.h
cblas_srotg cblas.h
cblas_srotm cblas.h
cblas_srotmg cblas.h
cblas_ssbmv cblas.h
cblas_sscal cblas.h
cblas_sspmv cblas.h
cblas_sspr cblas.h
cblas_sspr2 cblas.h
cblas_sswap cblas.h
cblas_ssymm cblas.h
cblas_ssymv cblas.h
cblas_ssyr cblas.h
cblas_ssyr2 cblas.h
cblas_ssyr2k cblas.h
cblas_ssyrk cblas.h
cblas_stbmv cblas.h
cblas_stbsv cblas.h
cblas_stpmv cblas.h
cblas_stpsv cblas.h
cblas_strmm cblas.h
cblas_strmv cblas.h
cblas_strsm cblas.h
cblas_strsv cblas.h
CBLAS_TRANSPOSE cblas.h
CBLAS_UPLO cblas.h
cblas_xerbla cblas.h
cblas_zaxpy cblas.h
cblas_zcopy cblas.h
cblas_zdotc_sub cblas.h
cblas_zdotu_sub cblas.h
cblas_zdscal cblas.h
cblas_zgbmv cblas.h
cblas_zgemm cblas.h
cblas_zgemv cblas.h
cblas_zgerc cblas.h
cblas_zgeru cblas.h
cblas_zhbmv cblas.h
cblas_zhemm cblas.h
cblas_zhemv cblas.h
cblas_zher cblas.h
cblas_zher2 cblas.h
cblas_zher2k cblas.h
cblas_zherk cblas.h
cblas_zhpmv cblas.h
cblas_zhpr cblas.h
cblas_zhpr2 cblas.h
cblas_zscal cblas.h
cblas_zswap cblas.h
cblas_zsymm cblas.h
cblas_zsyr2k cblas.h
cblas_zsyrk cblas.h
cblas_ztbmv cblas.h
cblas_ztbsv cblas.h
cblas_ztpmv cblas.h
cblas_ztpsv cblas.h
cblas_ztrmm cblas.h
cblas_ztrmv cblas.h
cblas_ztrsm cblas.h
cblas_ztrsv cblas.h
CblasColMajor cblas.h
CblasConjTrans cblas.h
CblasLeft cblas.h
CblasLower cblas.h
CblasNonUnit cblas.h
CblasNoTrans cblas.h
CblasRight cblas.h
CblasRowMajor cblas.h
CblasTrans cblas.h
CblasUnit cblas.h
CblasUpper cblas.h
CCP4File BALL
CCW_AL BALL::SmartsParser
CCW_AL_OR_UNSPECIFIED BALL::SmartsParser
CCW_DEFAULT BALL::SmartsParser
CCW_DEFAULT_OR_UNSPECIFIED BALL::SmartsParser
CCW_OH BALL::SmartsParser
CCW_OH_OR_UNSPECIFIED BALL::SmartsParser
CCW_SP BALL::SmartsParser
CCW_SP_OR_UNSPECIFIED BALL::SmartsParser
CCW_TB BALL::SmartsParser
CCW_TB_OR_UNSPECIFIED BALL::SmartsParser
CCW_TH BALL::SmartsParser
CCW_TH_OR_UNSPECIFIED BALL::SmartsParser
Cd BALL::Element
cd_ BALL::RandomNumberGenerator
Ce BALL::Element
ceiling BALL::Maths
cel_texture_ BALL::VIEW::GLRenderer
cell_dimension_ BALL::CCP4File
cell_dimensions_ BALL::CrystalInfo
cell_scaling_ BALL::DSN6File
CellType BALL::CrystalGenerator
CENTER_CAMERA BALL::VIEW::CompositeMessage
center_camera_action_ BALL::VIEW::MolecularControl
center_camera_id_ BALL::VIEW::MolecularStructure
center_data BALL::QSAR::InputConfiguration
center_of_torus_ BALL::RSEdge
center_y BALL::QSAR::InputConfiguration
centerOfProbe BALL::RSComputer
central_moments BALL::Spectrum
centre_ BALL::CHPI::AromaticRing
CERIUM BALL::Element
ces_parsers_ BALL::GAFFTypeProcessor
CESelementConnectionPredicate BALL::GAFFCESParser::CESelementConnectionPredicate
CESelementConnectionPredicate BALL::GAFFCESParser
CESelementPredicate BALL::GAFFCESParser::CESelementPredicate
CESelementPredicate BALL::GAFFCESParser
CESPredicate BALL::GAFFCESParser::CESPredicate
CESPredicate BALL::GAFFCESParser
cesstring_ BALL::GAFFCESParser
CESwildcards BALL::GAFFCESParser::CESPredicate
CESwildcardsConnectionPredicate BALL::GAFFCESParser::CESwildcardsConnectionPredicate
CESwildcardsConnectionPredicate BALL::GAFFCESParser
CESwildcardsPredicate BALL::GAFFCESParser::CESwildcardsPredicate
CESwildcardsPredicate BALL::GAFFCESParser
Cf BALL::Element
cgeev_ lapack.h
cgesdd_ lapack.h
Chain BALL
chain_ BALL::NMRStarFile::BALLToBMRBMapper
chain_ID_ BALL::PDBFile
chain_residue_names BALL::PDB::Structure
ChainColorProcessor BALL::VIEW
ChainColorProcessor BALL::VIEW::ChainColorProcessor
ChainList BALL
chainname_ BALL::Peptides::PeptideBuilder
chains BALL
chains_ BALL::SDGenerator
changeAllXToY_ BALL::SecondaryStructureProcessor
changeAtomElement_ BALL::VIEW::EditableScene
CHANGED__TYPE BALL::VIEW::EditableScene::EditOperation
changed_color_processor_ BALL::VIEW::Representation
CHANGED_COMPOSITE BALL::VIEW::CompositeMessage
CHANGED_COMPOSITE_HIERARCHY BALL::VIEW::CompositeMessage
changed_selection_color_ BALL::VIEW::DisplayProperties
changedEditThreshold BALL::VIEW::RaytraceableContourSurfaceDialog
changedNAMode_ BALL::VIEW::ModelSettingsDialog
changedRangeMax BALL::VIEW::RaytraceableContourSurfaceDialog
changedRangeMin BALL::VIEW::RaytraceableContourSurfaceDialog
changedRangeSteps BALL::VIEW::RaytraceableContourSurfaceDialog
changeDrawingMode_ BALL::VIEW::ModifyRepresentationDialog
changeDrawingModeTransparencyChanged BALL::VIEW::ModifyRepresentationDialog
changedSliderThreshold BALL::VIEW::RaytraceableContourSurfaceDialog
changeElement_ BALL::VIEW::EditableScene
changeEvent BALL::Mainframe
changeLock BALL::VIEW::ServerWidget
changeMode_ BALL::VIEW::EditSingleShortcut
changeProteinOrientation_ BALL::GeometricFit
changeToUserHomeDir BALL::Directory
ChannelFormat BALL::VIEW
ChannelID BALL::VIEW::ChannelFormat
channels BALL::VIEW::PixelFormat
ChannelType BALL::VIEW::ChannelFormat
Character BALL::PDB
charge_ BALL::Atom
charge_factor_ BALL::EFShiftProcessor
charge_map_ BALL::EFShiftProcessor
charge_type BALL::MOL2File::MoleculeStruct
ChargeDistribution BALL::FDPB
CHARMM_BENDS_ENABLED charmmBend.h
charmm_extra_block_A_ BALL::DCDFile
charmm_extra_block_B_ BALL::DCDFile
CHARMM_FF BALL::VIEW::MolecularStructure
charmm_ff_id_ BALL::VIEW::MolecularStructure
CHARMM_IMPROPER_TORSIONS_ENABLED charmmImproperTorsion.h
CHARMM_NB_ENABLED charmmNonBonded.h
CHARMM_STRETCHES_ENABLED charmmStretch.h
CHARMM_TORSIONS_ENABLED charmmTorsion.h
CharmmBend BALL
CharmmConfigurationDialog BALL::VIEW::CharmmConfigurationDialog
CharmmEEF1 BALL
CharmmFF BALL
chdir_ BALL::Directory
check_duplicate_keys_ BALL::INIFile
CHECK_RESIDUE BALL::VIEW::MolecularTaskMessage
check_structure_id_ BALL::VIEW::MolecularStructure
checkable_ BALL::VIEW::GenericControl
checkAtomPositions BALL::ResidueChecker
checkAtomType BALL::MMFF94
checkCharge BALL::ResidueChecker
checkCompleteness BALL::ResidueChecker
checkDrawingPrecision_ BALL::VIEW::DisplayProperties
checkEdges_ BALL::RingPerceptionProcessor
checkGAFFProperties BALL::GAFFCESParser::APSMatcher
checkGL BALL::VIEW::GLRenderWindow
checkInclude_ BALL::VIEW::ModifyRepresentationDialog
checkLoop BALL::VIEW::SnapshotVisualisationDialog
checkMenus BALL::VIEW::MainControl
checkNoLoop BALL::VIEW::SnapshotVisualisationDialog
checkObjectTrailer BALL::PersistenceManager
checkOverlap_ BALL::SDGenerator
checkProbe BALL::RSComputer
checkRock BALL::VIEW::SnapshotVisualisationDialog
checkTemplate BALL::ResidueChecker
checkValidity BALL::ComposedEnergyProcessor
chemical_environment BALL::GAFFTypeProcessor::TypeDefinition
chemical_formula BALL::PDB::RecordFORMUL
chemical_name BALL::PDB::RecordHETNAM
chemical_units BALL::NMRStarFile::MolecularSystem
ChemicalUnit BALL::NMRStarFile::MolecularSystem::ChemicalUnit
ChemicalUnit BALL::NMRStarFile::MolecularSystem
CHGroup BALL::CHPI
chi1 BALL::Rotamer
chi2 BALL::Rotamer
chi3 BALL::Rotamer
chi4 BALL::Rotamer
CHI__CHI BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
CHI__DISCRETE BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
CHI__REAL BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
child_entries_ BALL::VIEW::PluginDialog
ChildCompositeConstIterator BALL::Composite
ChildCompositeIterator BALL::Composite
children_connection_objects_ BALL::VIEW::ConnectionObject
chiral BALL::MOLFile::CountsStruct
CHIRAL_CLASS_UNSPECIFIED BALL::SmartsParser
chiral_class_value BALL::SmartsParser::SPAtom::PropertyValue
ChiralDef BALL::SmilesParser
CHIRALITY BALL::SmartsParser::SPAtom
chirality_ BALL::SmilesParser::SPAtom
CHLORINE BALL::Element
CHOOSE_FF BALL::VIEW::MainControl
chooseAmberFF BALL::VIEW::MolecularStructure
chooseCharmmFF BALL::VIEW::MolecularStructure
chooseDCDFile BALL::VIEW::MolecularDynamicsDialog
chooseFile BALL::VIEW::FileObserver
chooseForceField BALL::VIEW::MolecularStructure
chooseMMFF94 BALL::VIEW::MolecularStructure
chooseName_ BALL::VIEW::PropertyEditor
choosePressed BALL::VIEW::ModifyRepresentationDialog
CHPI BALL
CHROMIUM BALL::Element
CHX_angle_lower_ BALL::CHPI
ci_ptr_ BALL::CrystalGenerator
CIFFile BALL
circle0_ BALL::RSEdge
circle1_ BALL::RSEdge
Circle3 BALL
Cl BALL::Element
clas_model BALL::QSAR::ClassificationValidation
class_ BALL::VIEW::PyWidget
class_results_ BALL::QSAR::ClassificationValidation
classes_to_files_ BALL::VIEW::HelpViewer
classification BALL::PDB::RecordHEADER
classification_statistics BALL::QSAR::Registry
ClassificationModel BALL::QSAR
ClassificationModel BALL::QSAR::ClassificationModel
clayer_grid_ BALL::BindingPocketProcessor
cleanContactFaces BALL::SolventExcludedSurface
cleanEdges BALL::SolventExcludedSurface
cleanSingularToricFace BALL::SolventExcludedSurface
cleanSphericFaces BALL::SolventExcludedSurface
cleanToricFace BALL::SolventExcludedSurface
cleanToricFaces BALL::SolventExcludedSurface
cleanUpNodes_ BALL::ConnectedToPredicate
cleanVertices BALL::SolventExcludedSurface
clear
BALL::LogStream::clear() BALL::Client::clear() BALL::Composite::clear() BALL::MolecularInformation::clear() BALL::MoleculeObjectCreator::clear() BALL::Object::clear() BALL::ObjectCreator::clear() BALL::NamedProperty::clear() BALL::PropertyManager::clear() BALL::Selectable::clear() BALL::PreciseTime::clear() BALL::TimeStamp::clear() BALL::Bit::clear() BALL::BitVector::clear() BALL::TContour::clear() BALL::TContourLine::clear() BALL::TContourSurface::clear() BALL::HashGridBox3::clear() BALL::HashGrid3::clear() BALL::HashGrid3::clear(Position x, Position y, Position z) BALL::HashGrid3::clear(const Vector3 &vector) BALL::HashSet::clear() BALL::Options::clear() BALL::Quadruple::clear() BALL::TRegularData1D::clear() BALL::TRegularData2D::clear() BALL::TRegularData3D::clear() BALL::RegularExpression::clear() BALL::String::clear() BALL::Substring::clear() BALL::Triple::clear() BALL::ComposedEnergyProcessor::clear() BALL::EnergyProcessor::clear() BALL::CCP4File::clear() BALL::CIFFile::Item::clear() BALL::CIFFile::SaveFrame::clear() BALL::CIFFile::Datablock::clear() BALL::DCDFile::clear() BALL::DSN6File::clear() BALL::INIFile::clear() BALL::LineBasedFile::clear() BALL::NMRStarFile::Sample::Component::clear() BALL::NMRStarFile::Sample::clear() BALL::NMRStarFile::EntryInformation::clear() BALL::NMRStarFile::MonomericPolymer::HomologDB::clear() BALL::NMRStarFile::MonomericPolymer::clear() BALL::NMRStarFile::MolecularSystem::RelatedDB::clear() BALL::NMRStarFile::MolecularSystem::ChemicalUnit::clear() BALL::NMRStarFile::MolecularSystem::clear() BALL::NMRStarFile::BALLToBMRBMapper::clear() BALL::NMRStarFile::clear() BALL::Parameters::clear() BALL::ParameterSection::clear() BALL::PDB::Residue::clear() BALL::PDB::RecordCONECT::clear() BALL::PDB::RecordCON06::clear() BALL::PDB::RecordCON061::clear() BALL::PDB::RecordCON062::clear() BALL::PDB::RecordCON063::clear() BALL::PDB::RecordCON064::clear() BALL::PDB::RecordHELIX::clear() BALL::PDB::RecordMASTER::clear() BALL::PDB::RecordSEQRES::clear() BALL::PDB::RecordSHEET::clear() BALL::PDB::RecordSSBOND::clear() BALL::PDB::RecordTURN::clear() BALL::PDB::BookKeeping::clear() BALL::PDB::Structure::clear() BALL::PDBFile::clear(int state) BALL::PDBFile::clear() BALL::PDBInfo::clear() BALL::PDBRecords::clear() BALL::ResourceEntry::clear() BALL::ResourceFile::clear() BALL::TrajectoryFile::clear() BALL::TRRFile::clear() BALL::Atom::clear() BALL::AtomContainer::clear() BALL::Bond::clear() BALL::Expression::clear() BALL::ExpressionParser::SyntaxTree::clear() BALL::ExpressionPredicate::clear() BALL::ExpressionTree::clear() BALL::NucleicAcid::clear() BALL::Nucleotide::clear() BALL::PDBAtom::clear() BALL::Protein::clear() BALL::Element::clear() BALL::PTE_::clear() BALL::Residue::clear() BALL::SecondaryStructure::clear() BALL::Selector::clear() BALL::ConnectedToPredicate::clear() BALL::TAngle::clear() BALL::TBox3::clear() BALL::TCircle3::clear() BALL::TFFT1D::clear() BALL::TFFT2D::clear() BALL::TFFT3D::clear() BALL::TLine3::clear() BALL::TMatrix4x4::clear() BALL::PiecewiseFunction::clear() BALL::PiecewisePolynomial::clear() BALL::TPlane3::clear() BALL::TQuaternion::clear() BALL::RombergIntegrator::clear() BALL::TSimpleBox3::clear() BALL::TSphere3::clear() BALL::TSurface::clear() BALL::TVector2::clear() BALL::TVector3::clear() BALL::TVector4::clear() BALL::AmberFF::clear() BALL::AmberNonBonded::clear() BALL::GAFFCESParser::CESPredicate::clear() BALL::CharmmFF::clear() BALL::CharmmNonBonded::clear() BALL::ForceField::clear() BALL::PeriodicBoundary::clear() BALL::RuleEvaluator::clear() BALL::RuleProcessor::clear() BALL::SnapShot::clear() BALL::SnapShotManager::clear() BALL::MMFF94::clear() BALL::MMFF94NonBonded::clear() BALL::MMFF94ParametersBase::clear() BALL::MMFF94AtomTypeEquivalences::clear() BALL::MMFF94StretchParameters::clear() BALL::MMFF94BendParameters::clear() BALL::MMFF94StretchBendParameters::clear() BALL::MMFF94TorsionParameters::clear() BALL::MMFF94PlaneParameters::clear() BALL::MMFF94VDWParameters::clear() BALL::MMFF94ESParameters::clear() BALL::MMFF94ChargeProcessor::clear() BALL::AtomTypes::clear() BALL::CharmmEEF1::clear() BALL::CosineTorsion::clear() BALL::ForceFieldParameters::clear() BALL::LennardJones::clear() BALL::Potential1210::clear() BALL::QuadraticAngleBend::clear() BALL::QuadraticBondStretch::clear() BALL::QuadraticImproperTorsion::clear() BALL::ResidueTorsions::clear() BALL::Templates::clear() BALL::ShiftModel::clear() BALL::ShiftModel1D::clear() BALL::ShiftModel2D::clear() BALL::ShiftModule::clear() BALL::Spectrum::clear() BALL::ScoringComponent::clear() BALL::ScoringFunction::clear() BALL::ScoringTypes::clear() BALL::BuriedPolar::clear() BALL::CHPI::clear() BALL::HydrogenBond::clear() BALL::Lipophilic::clear() BALL::ChemScoreMetal::clear() BALL::NonpolarSolvation::clear() BALL::PolarSolvation::clear() BALL::RotationalEntropyLoss::clear() BALL::VanDerWaals::clear() BALL::SLICKEnergy::clear() BALL::SLICKScore::clear() BALL::ClaverieParameter::clear() BALL::GeneralizedBornModel::clear() BALL::Pair6_12InteractionEnergyProcessor::clear() BALL::Pair6_12RDFIntegrator::clear() BALL::PairExpInteractionEnergyProcessor::clear() BALL::PairExpRDFIntegrator::clear() BALL::PCMCavFreeEnergyProcessor::clear() BALL::PierottiCavFreeEnergyProcessor::clear() BALL::ReissCavFreeEnergyProcessor::clear() BALL::SolventDescriptor::clear() BALL::SolventParameter::clear() BALL::UhligCavFreeEnergyProcessor::clear() BALL::AssignBondOrderProcessor::clear() BALL::AssignBondOrderProcessor::Solution_::clear() BALL::AssignBondOrderProcessor::PQ_Entry_::clear() BALL::ConnectedComponentsProcessor::clear() BALL::Kekuliser::clear() BALL::RadialDistributionFunction::clear() BALL::RDFIntegrator::clear() BALL::RDFParameter::clear() BALL::RDFSection::clear() BALL::ReducedSurface::clear() BALL::RingAnalyser::clear() BALL::RotamerLibrary::clear() BALL::SDGenerator::clear() BALL::SideChainPlacementProcessor::clear() BALL::SmartsMatcher::RecStructCore_::clear() BALL::SmartsMatcher::RecStruct_::clear() BALL::SmartsParser::clear() BALL::SolventAccessibleSurface::clear() BALL::SolventExcludedSurface::clear() BALL::TriangulatedSurface::clear() BALL::Directory::clear() BALL::File::clear() BALL::Timer::clear() BALL::VIEW::ColorExtension2::clear() BALL::VIEW::MultiColorExtension::clear() BALL::VIEW::ColorHSV::clear() BALL::VIEW::ColorRGBA::clear() BALL::VIEW::ColorUnit::clear() BALL::VIEW::ColorUnitHue::clear() BALL::VIEW::Dataset::clear() BALL::VIEW::Vertex::clear() BALL::VIEW::Vertex2::clear() BALL::VIEW::ClippingPlane::clear() BALL::VIEW::CompositeManager::clear() BALL::VIEW::ConnectionObject::clear() BALL::VIEW::GeometricObject::clear() BALL::VIEW::MainControl::clear() BALL::VIEW::ModularWidget::clear() BALL::VIEW::Representation::clear() BALL::VIEW::RepresentationManager::clear() BALL::VIEW::ServerWidget::clear() BALL::VIEW::ShortcutRegistry::clear() BALL::VIEW::Camera::clear() BALL::VIEW::Stage::clear() BALL::VIEW::AtomBondModelBaseProcessor::clear() BALL::VIEW::AddBackboneModel::clear() BALL::VIEW::AddBallAndStickModel::clear() BALL::VIEW::ColorProcessor::clear() BALL::VIEW::HBondModelProcessor::clear() BALL::VIEW::ModelProcessor::clear() BALL::VIEW::AddSurfaceModel::clear() BALL::VIEW::Box::clear() BALL::VIEW::Disc::clear() BALL::VIEW::Label::clear() BALL::VIEW::Line::clear() BALL::VIEW::Mesh::clear() BALL::VIEW::MultiLine::clear() BALL::VIEW::Point::clear() BALL::VIEW::SimpleBox::clear() BALL::VIEW::Sphere::clear() BALL::VIEW::Tube::clear() BALL::VIEW::TwoColoredLine::clear() BALL::VIEW::TwoColoredTube::clear() BALL::VIEW::GLDisplayList::clear() BALL::VIEW::GLRenderer::clear() BALL::VIEW::POVRenderer::clear() BALL::VIEW::Renderer::clear() BALL::VIEW::STLRenderer::clear() BALL::VIEW::MeshBuffer::clear() BALL::VIEW::VRMLRenderer::clear() BALL::VIEW::GeometricControl::clear() BALL::VIEW::PyWidget::clear() BALL::VIEW::Scene::clear() BALL::VIEW::SDWidget::clear()
clear_animation_action_ BALL::VIEW::Scene
clear_selection_action_ BALL::VIEW::MainControl
clearAtomGrid BALL::VIEW::ColorProcessor
clearBonds BALL::GAMESSLogFile
clearClipboard BALL::VIEW::MolecularControl
clearData BALL::VIEW::MainControl
clearFields_ BALL::VIEW::LightSettings
clearGeometricObjects BALL::VIEW::Representation
clearHistory_ BALL::VIEW::PyWidget
clearKeySequences BALL::VIEW::ShortcutRegistry
clearLastPtr BALL::AutoDeletable
clearLightSources BALL::VIEW::Stage
clearNames_ BALL::VIEW::GLRenderer
clearNormals BALL::TSurface
clearParent_ BALL::VIEW::ConnectionObject
clearRecordedAnimation BALL::VIEW::Scene
clearScript BALL::VIEW::PyWidget
clearSelection BALL::VIEW::MainControl
clearSelector BALL::VIEW::MolecularControl
clearStartupScript BALL::VIEW::PythonSettings
clearStatusBarText_ BALL::VIEW::MainControl
clearSticks BALL::Spectrum
clearTriangles BALL::TSurface
clearUsedAtoms_ BALL::VIEW::AtomBondModelBaseProcessor
clearVertexBuffersFor BALL::VIEW::GLRenderer
clearVertices BALL::TSurface
clicked BALL::VIEW::FDPBDialog
Client BALL
clipboard_id_ BALL::VIEW::MolecularControl
clipping_plane_ BALL::VIEW::ClippingDialog
clipping_plane_context_menu_ BALL::VIEW::GeometricControl
ClippingDialog BALL::VIEW::ClippingDialog
ClippingDialog BALL::VIEW
ClippingPlane BALL::VIEW
cloneBond BALL::Atom
cloneBonds BALL
closeClicked BALL::VIEW::DockResultDialog
closeEvent BALL::VIEW::SnapshotVisualisationDialog
cluster BALL::BackboneClusterer
clusterer BALL::BackboneClusterer
clusterRings_ BALL::RingAnalyser
Cm BALL::Element
Co BALL::Element
COBALT BALL::Element
code_ BALL::PDBFile
coefficient_stderr_ BALL::QSAR::RegressionValidation
coefficients_ BALL::PiecewiseFunction
COIL BALL::SecondaryStructure
coil_color_ BALL::VIEW::SecondaryStructureColorProcessor
col_averages_ BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
col_axis_ BALL::CCP4File
col_spacing_ BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
COLLAPSE_ALL BALL::VIEW::MolecularControl
collapseAll BALL::VIEW::MolecularControl
collectAromaticAtoms_ BALL::Kekuliser
collectAtoms_ BALL::ForceField
collectBonds_ BALL::MMFF94
collectClasses_ BALL::VIEW::HelpViewer
collectHeteroAtomTypes BALL::MMFF94AtomTyper
collectPositions BALL::VIEW::AddBackboneModel
collectRecursive_ BALL::VIEW::Representation
collectRingBonds_ BALL::VIEW::AddBallAndStickModel
collectRings_ BALL::MMFF94
collectSystems_ BALL::Kekuliser
color2_ BALL::VIEW::ColorExtension2
color_index_ BALL::VIEW::POVRenderer
color_menu_ BALL::VIEW::MolecularControl
color_number_ BALL::VIEW::ColorMap
color_processor_ BALL::VIEW::Representation
color_strings_ BALL::VIEW::POVRenderer
ColorButton BALL::VIEW
colorByCustomColor_ BALL::VIEW::ModifyRepresentationDialog
colorByGrid_ BALL::VIEW::ModifyRepresentationDialog
ColorByGridProcessor BALL::VIEW::ColorByGridProcessor
colorChanged BALL::VIEW::ColorButton
ColorExtension2 BALL::VIEW
colorGeometricObject_ BALL::VIEW::AtomDistanceColorProcessor
ColorHSV BALL::VIEW
COLORING_CHAIN BALL::VIEW
COLORING_CUSTOM BALL::VIEW
COLORING_DISTANCE BALL::VIEW
COLORING_ELEMENT BALL::VIEW
COLORING_FORCES BALL::VIEW
COLORING_MOLECULE BALL::VIEW
COLORING_OCCUPANCY BALL::VIEW
coloring_settings_ BALL::VIEW::DisplayProperties
COLORING_UNKNOWN BALL::VIEW
coloring_update_enabled_ BALL::VIEW::Representation
ColoringMethod BALL::VIEW
coloringMuteableByDisplayProperties BALL::VIEW::ModelInformation
coloringOptionsPressed BALL::VIEW::DisplayProperties
ColoringSettingsDialog BALL::VIEW::ColoringSettingsDialog
coloringUpdateEnabled BALL::VIEW::Representation
coloringUpdatesChanged BALL::VIEW::DisplayProperties
ColorMap BALL::VIEW
ColorProcessor BALL::VIEW
ColorRGBA BALL::VIEW
colors BALL::VIEW::MultiColorExtension
ColorTable BALL::VIEW
ColorTable BALL::VIEW::ColorTable
ColorUnit BALL::VIEW
ColorUnitHue BALL::VIEW
COLUMN_ID__Properties BALL::VIEW::GeometricControl
COLUMN_ID__TYPE BALL::VIEW::GeometricControl
columnCount BALL::VIEW::ShortcutTableModel
ColumnID BALL::VIEW::GeometricControl
combo_box_ BALL::VIEW::PyWidget
ComboBoxDelegate BALL::VIEW
ComboBoxDelegate BALL::VIEW::ComboBoxDelegate
comm_size_ BALL::MPISupport
Command BALL::Client
COMMAND__SEND_OBJECT BALL::Client
COMMAND__UNKOWN BALL::Client
comment_ BALL::XYZFile
comment_format BALL::VIEW::PythonHighlighter
comment_pattern BALL::VIEW::PythonHighlighter
comments_ BALL::MOL2File
CommentStruct BALL::MOL2File
common_name BALL::NMRStarFile::MonomericPolymer
comp_ptr_ BALL::TMatrix4x4
Comparator BALL
Comparator BALL::Comparator
Compare_ BALL::VIEW::DockResultDialog
Compare_ BALL::DockResult
compare_mode_ BALL::String
COMPARE_OUTPUT classTest.h
compareAscendingly_ BALL::String
compareChains_ BALL::SDGenerator
compareChildren_ BALL::ExpressionTree
compareDescendingly_ BALL::String
CompareMode BALL::String
compile_ BALL::VIEW::GLDisplayList
compilePattern BALL::VIEW::PythonHighlighter
compilePattern_ BALL::RegularExpression
complement_selection_action_ BALL::VIEW::MainControl
complementary_bases_ BALL::VIEW::AddCartoonModel
complementSelection BALL::VIEW::MainControl
complementSelectionHelper_ BALL::VIEW::MainControl
complete_prefix_ BALL::VIEW::PyWidget
completionSelected_ BALL::VIEW::PyWidget
complex_ BALL::NonpolarSolvation
Component BALL::NMRStarFile::Sample
component_description BALL::PDB::RecordCOMPND
component_grouping_ BALL::SmartsParser
component_name BALL::NMRStarFile::MolecularSystem::ChemicalUnit
component_number BALL::PDB::RecordFORMUL
components BALL::NMRStarFile::Sample
ComponentVector BALL::ConnectedComponentsProcessor
Composite BALL
COMPOSITE__PROPERTIES BALL::VIEW::MolecularControl
composite_hashmap_ BALL::VIEW::ServerWidget::BALLViewServer
composite_iterator_ BALL::CompositeIteratorTraits
composite_manager_ BALL::VIEW::MainControl
composite_name_ BALL::VIEW::CompositeMessage
composite_properties_action_ BALL::VIEW::MolecularControl
composite_set_ BALL::VIEW::CompositeManager
composite_to_item_ BALL::VIEW::MolecularControl
composite_to_position_ BALL::VIEW::PositionColorProcessor
CompositeHashMap BALL::VIEW::ServerWidget::BALLViewServer
CompositeIteratorTraits BALL::Composite
CompositeManager BALL::VIEW
CompositeMessage BALL::VIEW
CompositeMessageType BALL::VIEW::CompositeMessage
CompositeProperties BALL::VIEW
CompositeReverseIterator BALL::Composite
composites_locked_ BALL::VIEW::MainControl
composites_locked_mutex_ BALL::VIEW::MainControl
compositesAreLocked BALL::VIEW::MainControl
CompositeSet BALL::VIEW::ColorProcessor
compute_ BALL::SecondaryStructureProcessor
compute_also_connectivity_ BALL::AssignBondOrderProcessor
compute_also_non_optimal_solutions_ BALL::AssignBondOrderProcessor
computeAdjacencyMatrix_ BALL::SDGenerator
computeAllMoments BALL::Spectrum
computeAngularDemand_ BALL::SDGenerator
computeAngularSeparation_ BALL::SDGenerator
computeBitSize BALL::VIEW::PixelFormat
computeBondOrders BALL::VIEW::EditableScene
computeByteSize BALL::VIEW::PixelFormat
computeCentre_ BALL::CHPI::AromaticRing
computeCFS_ BALL::SDGenerator
computeClaverieParameters BALL::PairExpInteractionEnergyProcessor
computeCoreCFS_ BALL::SDGenerator
computeDefaultPressed BALL::VIEW::StageSettings
computeDistance BALL::PeptideCapProcessor
computeEnergyDifference_ BALL::PolarSolvation
computeESEnergy_ BALL::PolarSolvation
computeESInteractionEnergy_ BALL::PolarSolvation
computeFermiParameters_ BALL::FermiBaseFunction
computeFullCycle_ BALL::PolarSolvation
computeHuInvariants BALL::Spectrum
computeNormalVector_ BALL::CHPI::AromaticRing
computeProperties_ BALL::EmpiricalHSShiftProcessor::PropertiesForShift_
computeSettingsFromModelDistance BALL::VIEW::StereoSettingsDialog
computeShelleyPriorities_ BALL::SDGenerator
computeSize BALL::VIEW::FrameBufferFormat
computeSphereTesselation_ BALL::NumericalSAS
computeTilingSetup_ BALL::VIEW::TilingRenderer
computeTopology BALL::TContourSurface::Cube
computeTorsions BALL::MolmecSupport
computeTriangles BALL::TContourSurface
computeVirtualHydrogens_ BALL::AssignBondOrderProcessor
concentration_max BALL::NMRStarFile::Sample::Component
concentration_min BALL::NMRStarFile::Sample::Component
concentration_value BALL::NMRStarFile::Sample::Component
condition BALL::NMRStarFile::NMRAtomDataSet
conect_atoms BALL::PDB::Structure
conect_records BALL::PDB::BookKeeping
ConectAtomList BALL::PDB::Structure
ConfigIO BALL::QSAR
ConfigurationReadingError BALL::QSAR::Exception::ConfigurationReadingError
ConfigurationReadingError BALL::QSAR::Exception
Conformation BALL::ConformationSet
confusion_matrix_ BALL::QSAR::ClassificationValidation
connect BALL::Client
connect_to BALL::FragmentDB::BuildBondsProcessor::Connection
connectChilds_ BALL::VIEW::PTEDialog
CONNECTED BALL::SmartsParser::SPAtom
connected_stream_ BALL::TCPServer
ConnectedComponentsProcessor BALL::ConnectedComponentsProcessor
Connection BALL::FragmentDB::BuildBondsProcessor
connection_object_ BALL::VIEW::Message
ConnectionObject BALL::VIEW
ConnectionObject BALL::VIEW::ConnectionObject
connectionRequested BALL::TCPServer
connectivity BALL::GAFFTypeProcessor::TypeDefinition
CONNOLLY BALL::GeometricFit
const_argument_pointer BALL::UnaryFunctor
const_argument_reference BALL::UnaryFunctor
const_first_argument_pointer BALL::BinaryFunctor
const_first_argument_reference BALL::BinaryFunctor
const_reverse_iterator BALL::PDBRecords
const_second_argument_pointer BALL::BinaryFunctor
const_second_argument_reference BALL::BinaryFunctor
Constant BALL
constants_ BALL::ParsedFunction
ConstContactFaceIterator BALL::SolventExcludedSurface
ConstDataIterator BALL::HashGridBox3
ConstFaceIterator BALL::GraphVertex
ConstOrientationIterator BALL::SASFace
ConstPointIterator BALL::TriangulatedSurface
ConstReference BALL::PDBRecords
construct BALL::Peptides::PeptideBuilder
constructExpressionTree_ BALL::Expression
constructRingSystem_ BALL::SDGenerator
ConstSingularEdgeIterator BALL::SolventExcludedSurface
ConstSphericFaceIterator BALL::SolventExcludedSurface
ConstToricFaceIterator BALL::SolventExcludedSurface
ConstTriangleIterator BALL::TriangulatedSurface
contact_faces_ BALL::SolventExcludedSurface
ContactFaceIterator BALL::SolventExcludedSurface
container_type BALL::BaseIterator
ContainerConstPointer BALL::Enumerator::IteratorTraits_
ContainerPointer BALL::Enumerator::IteratorTraits_
ContainerType BALL::Enumerator::IteratorTraits_
contains_selection_ BALL::Composite
containsAtomChilds_ BALL::MOL2File
containsSelection BALL::Composite
contentsDragLeaveEvent BALL::VIEW::DragLogView
ContentType BALL::JCAMPFile
contex_mutex_ BALL::VIEW::GLRenderWindow
context_composite_ BALL::VIEW::MolecularControl
context_menu_actions_ BALL::VIEW::GeometricControl
context_plane_ BALL::VIEW::GeometricControl
context_representation_ BALL::VIEW::GeometricControl
continuation_number BALL::PDB::RecordFORMUL
CONTINUE BALL::Processor
CONTINUED_LINE BALL::KCFFile
Contour BALL
ContourSurfaceDialog BALL::VIEW::ContourSurfaceDialog
control_ BALL::VIEW::DatasetController
control_selection_ BALL::VIEW::MainControl
CONTROL_WINDOW BALL::VIEW::Scene
controllers_ BALL::VIEW::DatasetControl
ControlSelectionMessage BALL::VIEW::ControlSelectionMessage
conventions_ BALL::Peptides::NameConverter
conversion_table_ BALL::Peptides::NameConverter
convertBrick_ BALL::DSN6File
convertName BALL::Peptides::NameConverter
convertToGaussian BALL::Spectrum
convertToLorentzian BALL::Spectrum
convertToReal_ BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
coordinate_transformation_records BALL::PDB::BookKeeping
coordinateSystemEnabled BALL::VIEW::Stage
COPPER BALL::Element
copy_id_ BALL::VIEW::MolecularControl
copy_list_ BALL::VIEW::MolecularControl
copyData BALL::QSAR::Model
copyDescriptorIDs BALL::QSAR::Model
copyTo BALL::File
cor_threshold BALL::QSAR::FeatureSelectionConfiguration
CORD_ BALL::DCDFile
CORE BALL::RingAnalyser
CORE_CHAIN BALL::SDGenerator
corr_par_ BALL::ShiftedLVMMMinimizer
correct BALL::RSComputer
correct_CA_shifts_ BALL::HaighMallionShiftProcessor
correctASUPositions_ BALL::CrystalGenerator
correctEdges BALL::ReducedSurface
CorrectionParameter BALL::ShiftedLVMMMinimizer
COSY_CH BALL::ShiftModel2D
COSY_HH BALL::ShiftModel2D
COULOMB BALL::FDPB::Boundary
coulombIntegralApproximation_ BALL::GeneralizedBornModel
count BALL::Composite
COUNT__ITEMS BALL::VIEW::MolecularControl
count_items_action_ BALL::VIEW::MolecularControl
countBondOrders BALL::AddHydrogenProcessor
countChildren BALL::ResourceEntry
countComponents BALL::ForceField
countDescendants_ BALL::Composite
countDirectories BALL::Directory
countEdges BALL::SmartsParser::SPNode
countFields BALL::String
countFieldsQuoted BALL::String
countFiles BALL::Directory
countFragments BALL::System
countFragments_ BALL::StructureMapper
CountingMode BALL::FragmentDB::NormalizeNamesProcessor
countInstances_ BALL::Embeddable
countInterBonds BALL::AtomContainer
countIntraBonds BALL::AtomContainer
countMolecules BALL::System
countNamedProperties BALL::PropertyManager
countNonEmptyBoxes BALL::HashGrid3
countNucleicAcids BALL::System
countPiElectrons_ BALL::AromaticityProcessor
countProteins BALL::System
countRecord BALL::PDBFile
countRecordFields BALL::PDBFile
countRecords BALL::PDBFile
counts_format_ BALL::MOLFile
CountsStruct BALL::MOLFile
countSubexpressions BALL::RegularExpression
countValue BALL::BitVector
countVariants BALL::Enumerator
covalent_radius_ BALL::Element
Cp_ref BALL::CharmmEEF1::Values
Cp_ref_ BALL::CharmmEEF1
cpu_speed_ BALL::Timer
Cr BALL::Element
crd BALL::MMFF94AtomType
create6Ring_ BALL::VIEW::AddCartoonModel
create_button_ BALL::VIEW::DisplayProperties
create_coordinate_system_ BALL::VIEW::Scene
CREATE_DISTANCE_GRID BALL::VIEW::MolecularTaskMessage
create_distance_grid_id2_ BALL::VIEW::MolecularStructure
create_distance_grid_id_ BALL::VIEW::MolecularStructure
CREATE_REPRESENTATION BALL::VIEW::MolecularControl
create_representations_for_new_molecules_ BALL::VIEW::DisplayProperties
createAtomGrid BALL::VIEW::ColorProcessor
createBiCubicSpline BALL::CubicSpline2D
createBond_ BALL::VIEW::EditableScene
createBonds BALL::SmilesParser
createBoxes_ BALL::VIEW::GLRenderer
createColorProcessor BALL::VIEW::ColoringSettingsDialog
createConcaveEdge BALL::SESComputer
createContourLine BALL::TContourLine
createConvexEdge BALL::SESComputer
createCoordinateSystem BALL::VIEW::Scene
createCoordinateSystem_ BALL::VIEW::Scene
createCoordinateSystemAtOrigin BALL::VIEW::Scene
createDisk BALL::TriangulatedSurface
createDotBox_ BALL::VIEW::GLRenderer
createDottedSphere_ BALL::VIEW::GLRenderer
createDoubleRing_ BALL::VIEW::AddCartoonModel
createEdge BALL::SolventAccessibleSurface
createEditor BALL::VIEW::ComboBoxDelegate
createEditorWidget_ BALL::VIEW::PropertyEditor
createEntries BALL::VIEW::AssignBondOrderResultsDialog
createEvaluationMethod BALL::VIEW::DockingController
createFace BALL::SolventAccessibleSurface
createFieldLine_ BALL::VIEW::FieldLineCreator
createFinalString BALL::UCK
createFloatString BALL::VIEW
createFPSInfo_ BALL::VIEW::Scene
createFreeEdge BALL::RSComputer
createFreeToricFace BALL::SESComputer
createGridFromCameraDistance BALL::VIEW::MolecularStructure
createGridFromDistance BALL::VIEW::MolecularStructure
createHashGrid BALL::SASTriangulator
createHelix_ BALL::VIEW::AddCartoonModel
createHotkey BALL::VIEW::Hotkey
createLineBox_ BALL::VIEW::GLRenderer
createLines BALL::VIEW::FieldLineCreator
createMap BALL::VIEW::ColorMap
createMapJet BALL::VIEW::ColorMap
createMapping BALL::NMRStarFile::BALLToBMRBMapper
createMenuHelpEntry_ BALL::VIEW::PyWidget
CreateMethodMap BALL::ShiftModel
createModelProcessor BALL::VIEW::ModelSettingsDialog
createModule_ BALL::ShiftModel
createMolecule_ BALL::VIEW::EditableScene
createMultipleLabels_ BALL::VIEW::LabelDialog
createNewBool_ BALL::VIEW::PropertyEditor
createNewClippingPlane BALL::VIEW::GeometricControl
createNewDouble_ BALL::VIEW::PropertyEditor
createNewFloat_ BALL::VIEW::PropertyEditor
createNewInt_ BALL::VIEW::PropertyEditor
createNewMolecule BALL::VIEW::EditableScene
createNewNode_ BALL::ConnectedToPredicate
createNewString_ BALL::VIEW::PropertyEditor
createNewTriangles BALL::SASTriangulator
createNewUInt_ BALL::VIEW::PropertyEditor
createNonBondedList_ BALL::VanDerWaals
createObject BALL::PersistenceManager
createOneLabel_ BALL::VIEW::LabelDialog
createParameters BALL::QSAR::LibsvmModel
createPeak_ BALL::ShiftModel2D
createPlanes BALL::SASTriangulator
createPoints BALL::SASTriangulator
createProblem BALL::QSAR::LibsvmModel
createRaytraceableGrid BALL::VIEW::RegularData3DController
createRepresentation_ BALL::VIEW::MolecularControl
createRepresentationMode BALL::VIEW::DisplayProperties
createResidue_ BALL::Peptides::PeptideBuilder
createRibbon_ BALL::VIEW::AddBackboneModel
createScript_ BALL::VIEW::PyWidget
createSimpleNucleicAcid_ BALL::VIEW::AddCartoonModel
createSingularVertex BALL::SESComputer
createSolidBox_ BALL::VIEW::GLRenderer
CreateSpectrumProcessor BALL::CreateSpectrumProcessor
createSpheres_ BALL::VIEW::GLRenderer
createSphericFace BALL::SESComputer
createSpline BALL::CubicSpline1D
createStrand_ BALL::VIEW::AddCartoonModel
createTexture BALL::VIEW::GLRenderWindow
createTextureFromGrid BALL::VIEW::GLRenderer
createToricFace BALL::SESComputer
createTriangleAndEdges BALL::SESTriangulator
createTrivialMapping BALL::NMRStarFile::BALLToBMRBMapper
createTube BALL::TriangulatedSurface
createTube_ BALL::VIEW::AddBackboneModel
createTubeHelix_ BALL::VIEW::AddCartoonModel
createTubes_ BALL::VIEW::GLRenderer
createVectorGrid BALL::VIEW::RegularData3DController
createVoid BALL::Factory
createWatsonCrickModel_ BALL::VIEW::AddCartoonModel
creating_representations_ BALL::VIEW::GeometricControl
CreationMethod BALL::Expression
crystal_dimension_ BALL::DSN6File
Cs BALL::Element
csv_compound_labels BALL::QSAR::InputConfiguration
csv_desc_labels BALL::QSAR::InputConfiguration
csv_file BALL::QSAR::InputConfiguration
csv_no_response BALL::QSAR::InputConfiguration
csv_separator BALL::QSAR::InputConfiguration
CTPNode BALL::ConnectedToPredicate
Cu BALL::Element
Cube BALL::TContourSurface
Cube BALL::TContourSurface::Cube
cubicInterpolation BALL::VIEW
CubicSpline2D
BALL::CubicSpline2D::CubicSpline2D() BALL::CubicSpline2D::CubicSpline2D(const std::vector< std::vector< float > > &sample_positions_x, const std::vector< float > &sample_positions_y, const std::vector< std::vector< float > > &sample_values, bool return_average=false, bool is_natural=true, const std::vector< float > &x_lower_derivatives=std::vector< float >(), const std::vector< float > &x_upper_derivatives=std::vector< float >(), float y_lower_derivative=0., float y_upper_derivative=0., int verbosity=VERBOSITY_LEVEL_DEBUG) BALL::CubicSpline2D::CubicSpline2D(const std::vector< std::vector< float > > &sample_positions_x, const std::vector< float > &sample_positions_y, const std::vector< std::vector< float > > &sample_values, const std::vector< float > &x_default_values, float y_default_value, const std::vector< float > &x_lower_bounds, const std::vector< float > &x_upper_bounds, float y_lower_bound, float y_upper_bound, bool is_natural=true, const std::vector< float > &x_lower_derivatives=std::vector< float >(), const std::vector< float > &x_upper_derivatives=std::vector< float >(), float y_lower_derivative=0.0, float y_upper_derivative=0.0, int verbosity=VERBOSITY_LEVEL_DEBUG) BALL::CubicSpline2D::CubicSpline2D(const std::vector< float > &sample_positions_x, const std::vector< float > &sample_positions_y, const std::vector< std::vector< float > > &sample_values, bool return_average=false, bool is_natural=true, const std::vector< float > &x_lower_derivatives=std::vector< float >(), const std::vector< float > &x_upper_derivatives=std::vector< float >(), float y_lower_derivative=0., float y_upper_derivative=0., int verbosity=VERBOSITY_LEVEL_DEBUG) BALL::CubicSpline2D::CubicSpline2D(const std::vector< float > &sample_positions_x, const std::vector< float > &sample_positions_y, const std::vector< std::vector< float > > &sample_values, const std::vector< float > &x_default_values, float y_default_value, const std::vector< float > &x_lower_bounds, const std::vector< float > &x_upper_bounds, float y_lower_bound, float y_upper_bound, bool is_natural=true, const std::vector< float > &x_lower_derivatives=std::vector< float >(), const std::vector< float > &x_upper_derivatives=std::vector< float >(), float y_lower_derivative=0.0, float y_upper_derivative=0.0, int verbosity=VERBOSITY_LEVEL_DEBUG) BALL::CubicSpline2D::CubicSpline2D(const CubicSpline2D &cs2D)
CUDAError BALL::Exception::CUDAError
CUDAError BALL::Exception
CUPRUM BALL::Element
cur_box_ BALL::HashGridBox3::BoxIteratorTraits
CURIUM BALL::Element
curr_double BALL::Kekuliser::AtomInfo
curr_num_of_vect_pairs_ BALL::StrangLBFGSMinimizer
curr_number_of_cols_ BALL::ShiftedLVMMMinimizer
current_aps_type BALL::GAFFCESParser::State
current_aromatic_system_ BALL::Kekuliser
current_atom_ BALL::VIEW::EditableScene
current_block_ BALL::GAMESSDatFile
current_bond_ BALL::VIEW::EditableScene
current_chain BALL::PDB::AdditionalAtomInfo
current_chain_ BALL::PDBFile
current_coefficient_line BALL::GAMESSLogFile
current_const_atom_ BALL::PDBFile
current_const_chain_ BALL::PDBFile
current_const_protein_ BALL::PDBFile
current_const_residue_ BALL::PDBFile
current_datablock_ BALL::CIFFile
CURRENT_DIRECTORY BALL::FileSystem
current_energy_ BALL::EnergyMinimizer
current_grad_ BALL::EnergyMinimizer
current_image_ BALL::VIEW::GLOffscreenTarget
current_item_ BALL::CIFFile
current_light_ BALL::VIEW::LightSettings
current_line_ BALL::VIEW::PyWidget
current_mode_ BALL::VIEW::Scene
current_model_ BALL::PDBFile
current_molecule_ BALL::GAFFTypeProcessor
current_node_ BALL::PubChemDownloader
current_PDB_atom_ BALL::PDBFile
current_penalty_ BALL::Kekuliser
current_position_ BALL::TContourSurface::Cube
current_predicate BALL::GAFFCESParser
current_protein_ BALL::PDBFile
current_record_ BALL::PDBFile
current_record_type_ BALL::PDBFile
current_representation_ BALL::VIEW::MaterialSettings
current_request_id_ BALL::VIEW::PubChemDialog
current_residue BALL::PDB::AdditionalAtomInfo
current_residue_ BALL::PDBFile
current_root_predicate BALL::GAFFCESParser
current_round_ BALL::GeometricFit
current_saveframe_ BALL::CIFFile
current_script_ BALL::VIEW::PyWidget
current_secs_ BALL::Timer
current_set BALL::GAMESSLogFile
current_step_ BALL::VIEW::DemoTutorialDialog
current_system_time_ BALL::Timer
current_temperature_ BALL::MolecularDynamics
current_threshold_ BALL::VIEW::RaytraceableContourSurfaceDialog
current_time_ BALL::MolecularDynamics
current_usecs_ BALL::Timer
current_user_time_ BALL::Timer
currentEntry BALL::VIEW::Preferences
currentPage BALL::VIEW::Preferences
currentStackPage BALL::VIEW::PreferencesEntry
curvature_ BALL::CubicSpline1D
custom_model_information_ BALL::VIEW::Representation
CustomColorProcessor BALL::VIEW::CustomColorProcessor
customColorTransparencyChanged BALL::VIEW::ModifyRepresentationDialog
customEvent BALL::VIEW::Scene
cut_hash_map_ BALL::TContourSurface
cut_id_ BALL::VIEW::MolecularControl
cut_off_solvation_ BALL::CharmmNonBonded
cut_on_solvation_ BALL::CharmmNonBonded
cutlo_ BALL::EnergyMinimizer
CW_AL BALL::SmartsParser
CW_AL_OR_UNSPECIFIED BALL::SmartsParser
CW_DEFAULT BALL::SmartsParser
CW_DEFAULT_OR_UNSPECIFIED BALL::SmartsParser
CW_OH BALL::SmartsParser
CW_OH_OR_UNSPECIFIED BALL::SmartsParser
CW_SP BALL::SmartsParser
CW_SP_OR_UNSPECIFIED BALL::SmartsParser
CW_TB BALL::SmartsParser
CW_TB_OR_UNSPECIFIED BALL::SmartsParser
CW_TH BALL::SmartsParser
CW_TH_OR_UNSPECIFIED BALL::SmartsParser
CX_distance_upper_ BALL::CHPI
cycleDFS_ BALL::RotationalEntropyLoss
cys_pressed BALL::VIEW::PeptideDialog
CYTOSINE BALL::DNAMutator
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