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a1 BALL::HybridisationProcessor::AtomNames_
a2 BALL::HybridisationProcessor::AtomNames_
a3 BALL::HybridisationProcessor::AtomNames_
A_B_FORMAT BALL::LennardJones
a_i_ BALL::ConjugateGradientMinimizer
A_STAR BALL::AssignBondOrderProcessor::Algorithm
abbreviation_common BALL::NMRStarFile::MolecularSystem
abonds BALL::Kekuliser::AtomInfo
ABORT_IF classTest.h
abort_test BALL::VIEW::TestFramework
abortClicked BALL::VIEW::DockProgressDialog
abortScript BALL::VIEW::PyWidget
abortTest BALL::VIEW::TestFramework
about BALL::Mainframe
about_to_quit_ BALL::VIEW::MainControl
aboutToExit BALL::VIEW::MainControl
abs BALL::Maths
absolute_temperature_ BALL::NonpolarSolvation
ac_split_ BALL::AntechamberFile
acceptor_occupied_ BALL::HBondShiftProcessor
acceptor_types_ BALL::HBondShiftProcessor
AChar BALL::PDB
acidic_color_ BALL::VIEW::ResidueTypeColorProcessor
ACTINIUM BALL::Element
action BALL::VIEW::Hotkey
action1_ BALL::VIEW::PubChemDialog
action2_ BALL::VIEW::PubChemDialog
actions_ BALL::VIEW::DatasetController
actions_for_one_set_ BALL::VIEW::DatasetController
activate_async BALL::TCPServerThread
activated_item_ BALL::VIEW::AssignBondOrderResultsDialog
activatedItem_ BALL::VIEW::MolecularControl
activatedOrderItem_ BALL::VIEW::EditableScene
active_ BALL::VIEW::ClippingPlane
active_index_ BALL::VIEW::PluginDialog
ACTIVE_STEREO BALL::VIEW::GLRenderer
active_stereo_action_ BALL::VIEW::Scene
activities BALL::QSAR::InputConfiguration
adapt_char_ BALL::TRRFile
adapt_double_ BALL::TRRFile
adaptWaterBox BALL::MolmecSupport
add_button_ BALL::VIEW::PubChemDialog
add_hydrogens_action_ BALL::VIEW::EditableScene
add_hydrogens_id_ BALL::VIEW::MolecularStructure
add_missing_hydrogens_ BALL::AssignBondOrderProcessor
ADD_TO_GEOMETRIC_CONTROL BALL::VIEW::RepresentationMessage
addAlgorithm BALL::VIEW::DockDialog
addAllRecords_ BALL::PDBFile
addAtom BALL::VIEW::AtomDistanceColorProcessor
AddBackboneModel BALL::VIEW
addBasisOption BALL::GAMESSLogFile
AddCartoonModel BALL::VIEW
addCESelementConnectionPredicate BALL::GAFFCESParser::CESPredicate
addCESelementPredicate BALL::GAFFCESParser::CESPredicate
addCESwildcardsConnectionPredicate BALL::GAFFCESParser::CESPredicate
addCESwildcardsPredicate BALL::GAFFCESParser::CESPredicate
addChild BALL::ConnectedToPredicate::CTPNode
addCoefficient BALL::GAMESSLogFile
addComponent BALL::ComposedEnergyProcessor
addComposite BALL::VIEW::MolecularControl
addComposite_ BALL::VIEW::MolecularStructure
addDataItem BALL::CIFFile::SaveFrame
addDataPath BALL::Path
ADDED__ATOM BALL::VIEW::EditableScene::EditOperation
ADDED__BOND BALL::VIEW::EditableScene::EditOperation
addEdge BALL::SmartsParser
addEditOperation BALL::VIEW::EditOperationDialog
addEmptyRow BALL::VIEW::HotkeyTable
addEntry BALL::QSAR::Registry
addGlWindow BALL::VIEW::Scene
addHydrogen_ BALL::AddHydrogenProcessor
addHydrogens BALL::VIEW::MolecularStructure
addItem_ BALL::VIEW::GeometricControl
Addition BALL
additional_grid_distance_ BALL::VIEW::ColorProcessor
AdditionalAtomInfo BALL::PDB
AdditionalAtomInfo BALL::PDB::AdditionalAtomInfo
addLambda BALL::QSAR::Model
addLightPressed BALL::VIEW::LightSettings
addLightSource BALL::VIEW::Stage
AddLineModel BALL::VIEW
addMissingHydrogens BALL::SmilesParser
addModel_ BALL::VIEW::RaytraceableContourSurfaceDialog
addModularWidget BALL::VIEW::MainControl
addMonomericPolymer BALL::NMRStarFile
addMovable_ BALL::ResidueRotamerSet
addNeededObjects_ BALL::PersistenceManager
addNewAND BALL::GAFFCESParser::CESPredicate
addNewFragment_ BALL::FragmentDB
addNewOR BALL::GAFFCESParser::CESPredicate
addNode BALL::SmartsParser
addNonOverlappingMolecules BALL::MolmecSupport
addPair BALL::CIFFile::Item
addPointerPair_ BALL::PersistenceManager
addPropertiesFromSPAtom BALL::SmartsParser::SPAtom
addRecursiveEdge BALL::SmartsParser
addRepresentation BALL::VIEW::GeometricControl
addRingConnection BALL::SmartsParser
addRow BALL::VIEW::GenericControl
addScoring BALL::DockResult
addSolutionToStructures BALL::VIEW::AssignBondOrderResultsDialog
addSolvent BALL::PeriodicBoundary
addSPEdge BALL::SmartsParser::SPNode
addSphere_s_ BALL::BindingPocketProcessor
addStructure BALL::VIEW::EditableScene
addStructure_ BALL::VIEW::EditableScene
AddSurfaceModel BALL::VIEW
addTextNode_ BALL::PubChemDownloader
addTriangles_ BALL::TContourSurface
addTruePredicate BALL::GAFFCESParser::CESPredicate
addValue BALL::CIFFile::Item
AddVanDerWaalsModel BALL::VIEW
addVariants BALL::Enumerator
addWidget_ BALL::VIEW::PropEditorWidget
ADENINE BALL::DNAMutator
adjacent_edges_ BALL::NodeItem
advanced_options_modified_ BALL::VIEW::DisplayProperties
advancedClicked BALL::VIEW::DockResultDialog
after BALL::String
Ag BALL::Element
ai BALL::MMFF94VDWParameters::VDWEntry
Aij_ BALL::LennardJones
ala_pressed BALL::VIEW::PeptideDialog
alg_ BALL::VIEW::DockProgressDialog
algAdvancedPressed BALL::VIEW::DockDialog
Algorithm BALL::AssignBondOrderProcessor
ALGORITHM__DATABASE BALL::RotationalEntropyLoss
ALGORITHM__GUESS BALL::RotationalEntropyLoss
algorithm_dialogs_ BALL::VIEW::DockDialog
algorithm_opt_ BALL::VIEW::DockDialog
algorithmChosen BALL::VIEW::DockDialog
AlgorithmType BALL::RotationalEntropyLoss
ALIPHATIC BALL::SmartsParser::SPAtom
all_amino_acids_ BALL::VIEW::PeptideDialog
all_aromatic_atoms_ BALL::Kekuliser
all_aromatic_rings_ BALL::CHPI
ALL_ATOMS BALL::VIEW::LabelModel
all_atoms_ BALL::SmilesParser
all_CH_groups_ BALL::CHPI
all_fragments_ BALL::FragmentDistanceCollector
all_hydrogen_are_targets_ BALL::HaighMallionShiftProcessor
ALL_ITEMS BALL::VIEW::LabelModel
all_names_ BALL::VIEW::GLRenderer
ALL_RECORD_TYPES BALL::PDB
ALL_RESIDUES BALL::VIEW::LabelModel
all_small_beers_ BALL::RingPerceptionProcessor
all_small_rings_ BALL::RingPerceptionProcessor
all_torsions_ BALL::ResidueTorsions
allDiffEquations_ BALL::QSAR::FitModel
allEquations_ BALL::QSAR::FitModel
ALLModel BALL::QSAR::ALLModel
ALLModel BALL::QSAR
allowed_sf_ BALL::VIEW::DockDialog
allowPaste_ BALL::VIEW::MolecularControl
alpha_blending_ BALL::VIEW::ColorMap
ALPHA_CHANNEL BALL::VIEW::ChannelFormat
alpha_i BALL::MMFF94VDWParameters::VDWEntry
ALPHANUMERIC BALL::RegularExpression
already_used_ BALL::HydrogenBond
alreadySeenThisAtom BALL::GAFFCESParser::CESPredicate
ALUMINUM BALL::Element
Am BALL::Element
AMBER_BEND_ENABLED amberBend.h
amber_ff_id_ BALL::VIEW::MolecularStructure
AMBER_NB_ENABLED amberNonBonded.h
AMBER_STRETCH_ENABLED amberStretch.h
AMBER_TORSIONS_ENABLED amberTorsion.h
AmberBend BALL
AmberConfigurationDialog BALL::VIEW::AmberConfigurationDialog
AmberFF BALL
AMBIENT BALL::VIEW::LightSource
ambient_ BALL::VIEW::Stage
ambient_color BALL::VIEW::Stage::RaytracingMaterial
ambient_intensity BALL::VIEW::Stage::RaytracingMaterial
ambientFactorChanged BALL::VIEW::MaterialSettings
ambiguity_code BALL::NMRStarFile::NMRAtomData
AMERICIUM BALL::Element
amide_proton_factor_ BALL::HBondShiftProcessor
amide_proton_subtrahend_ BALL::HBondShiftProcessor
amide_protons_are_targets_ BALL::HBondShiftProcessor
AminoAcidDescriptor BALL::Peptides
analyticallyIntegrateInterval BALL::Pair6_12RDFIntegrator
ancestor_ BALL::Composite::AncestorIteratorTraits
AncestorConstIterator BALL::Composite
AncestorIterator BALL::Composite
AncestorIteratorTraits BALL::Composite
AND_LOW BALL::SmartsParser
ang_num_ BALL::GeometricFit::RotationAngles_
angle_action_ BALL::VIEW::MolecularControl
angle_changed BALL::VIEW::PeptideDialog
angle_measure BALL::PDB::RecordCISPEP
animate_ BALL::VIEW::Scene
animateClicked BALL::VIEW::SnapshotVisualisationDialog
animation_export_PNG_action_ BALL::VIEW::Scene
animation_export_POV_action_ BALL::VIEW::Scene
animation_export_VRML_action_ BALL::VIEW::Scene
animation_points_ BALL::VIEW::Scene
animation_repeat_action_ BALL::VIEW::Scene
animation_running_ BALL::VIEW::SnapshotVisualisationDialog
animation_smoothness_ BALL::VIEW::Scene
animation_thread_ BALL::VIEW::Scene
animationSpeedChanged BALL::VIEW::SnapshotVisualisationDialog
AnimationThread BALL::VIEW
anion BALL::MMFF94AtomTyper::AromaticType
annotateAliphaticAndAromaticRingAtoms_ BALL::GAFFTypeProcessor
annotateBondTypes_ BALL::GAFFTypeProcessor
annotatePlanarRingAtoms_ BALL::GAFFTypeProcessor
annotateRingSizes_ BALL::GAFFTypeProcessor
ANTIMONY BALL::Element
ANY BALL::SmartsParser::SPBond
ANY_TYPE BALL::Atom
ANY_ZE BALL::SmartsParser
appendHotkey BALL::VIEW::HotkeyTable
appendIconPath BALL::VIEW::IconLoader
appendSection BALL::INIFile
appendText BALL::VIEW::PyWidget
appendText_ BALL::VIEW::PyWidget
appendToHistory_ BALL::VIEW::PyWidget
applied BALL::VIEW::Preferences
apply_processor_ BALL::VIEW::AtomOverview
applyAncestor BALL::Composite
applyBonds BALL::Atom
applyChild BALL::Composite
applyChildNostart_ BALL::Composite
applyColoringSettings_ BALL::VIEW::DisplayProperties
applyDescendant BALL::Composite
applyDescendantPostorder BALL::Composite
applyDescendantPreorder BALL::Composite
applyFirstSnapShot BALL::SnapShotManager
applyForceFieldSettings_ BALL::VIEW::MolecularStructure
applyInterBond BALL::AtomContainer
applyIntraBond BALL::AtomContainer
applyLastSnapShot BALL::SnapShotManager
applyLevel BALL::Composite
applyLevelNostart_ BALL::Composite
applyModelSettings_ BALL::VIEW::DisplayProperties
applyNextSnapShot BALL::SnapShotManager
applyNostart_ BALL::ResourceEntry
applyPostorder BALL::Composite
applyPreferencesClicked_ BALL::VIEW::MainControl
applyPreorder BALL::Composite
applyPreorderNostart_ BALL::Composite
ApplyProcessor BALL::VIEW::AtomOverview
applySettings BALL::VIEW::NetworkPreferences
applySolution_ BALL::Kekuliser
applySplit BALL::VIEW::ModifyRepresentationDialog
applyTo_ BALL::VIEW::DisplayProperties
aps_matcher BALL::GAFFCESParser::CESPredicate
aps_terms BALL::GAFFCESParser::APSMatcher
APS_TRUE BALL::GAFFCESParser::APSMatcher
APSMatcher BALL::GAFFCESParser
APSMatcher BALL::GAFFCESParser::APSMatcher
APSTerm BALL::GAFFCESParser::APSMatcher
APSTerm BALL::GAFFCESParser::APSMatcher::APSTerm
APSType BALL::GAFFCESParser::APSMatcher
Ar BALL::Element
areInOneAromaticRing BALL::MMFF94
areInOneRing BALL::MMFF94
arg_pressed BALL::VIEW::PeptideDialog
ARGENTUM BALL::Element
ARGON BALL::Element
argument BALL::ExpressionParser::SyntaxTree
argument_ BALL::ExpressionPredicate
argument_pointer BALL::UnaryFunctor
argument_reference BALL::UnaryFunctor
argument_type BALL::UnaryFunctor
arom BALL::MMFF94AtomType
arom_proc_ BALL::SMARTSPredicate
aromat_list_ BALL::JohnsonBoveyShiftProcessor
aromatic_atoms_ BALL::Kekuliser
AROMATIC_BOND BALL::GAFFCESParser::APSMatcher
AROMATIC_BOND_TO_PARENT BALL::GAFFCESParser::APSMatcher
aromatic_bonds_ BALL::MMFF94
aromatic_color_ BALL::VIEW::ResidueTypeColorProcessor
aromatic_systems_ BALL::Kekuliser
aromatic_types_5_map_ BALL::MMFF94AtomTyper
AromaticRing BALL::CHPI
AromaticType BALL::MMFF94AtomTyper
aromatize BALL::AromaticityProcessor
aromatizeSimple BALL::AromaticityProcessor
arrangeBonds_ BALL::Bond
ARRAY BALL::JCAMPFile
arrow_width_ BALL::VIEW::AddCartoonModel
ARSENIC BALL::Element
As BALL::Element
ASCII__TAB BALL
asn_pressed BALL::VIEW::PeptideDialog
asp_pressed BALL::VIEW::PeptideDialog
aspec BALL::MMFF94AtomType
asps_ BALL::BindingPocketProcessor
ASSEMBLED BALL::SDGenerator
assembleSD_ BALL::SDGenerator
assign BALL::Templates
assign_bond_orders_id_ BALL::VIEW::MolecularStructure
assign_charges_id_ BALL::VIEW::MolecularStructure
assignAromaticType_5_ BALL::MMFF94AtomTyper
assignAtomtype_ BALL::GAFFTypeProcessor
assignBackboneAtoms BALL::AtomBijection
AssignBaseProcessor BALL::AssignBaseProcessor
AssignBondOrderConfigurationDialog BALL::VIEW::AssignBondOrderConfigurationDialog
AssignBondOrderResultsDialog BALL::VIEW::AssignBondOrderResultsDialog
assignBondTypes_ BALL::MMFF94
assignByName BALL::AtomBijection
assignCAlphaAtoms BALL::AtomBijection
assignCharges BALL::Templates
assignFormalCharge BALL::MMFF94ChargeProcessor
ASSIGNMENT__ELDRIDGE BALL::FresnoTypes
ASSIGNMENT__FRESNO BALL::FresnoTypes
assignMMFF94BondType BALL::MMFF94
assignNucleotideAtoms_ BALL::VIEW::AddCartoonModel
assignPartialCharges_ BALL::MMFF94ChargeProcessor
assignRTD_ BALL::RingAnalyser
assignShifts_ BALL::NMRStarFile
assignSpecificValues_ BALL::AtomTyper
assignTorsion BALL::ResidueTorsions
assignTrivial BALL::AtomBijection
AssignTypeNameProcessor BALL::AssignTypeNameProcessor
assignTypeNames BALL::Templates
AssignTypeProcessor BALL::AssignTypeProcessor
ASTATINE BALL::Element
ASU BALL::CrystalGenerator
asu_ BALL::CrystalGenerator
ATIJK BALL::MMFF94StretchBend::Bend
Atom BALL
atom_2_distance_ BALL::VIEW::AtomDistanceColorProcessor
atom_areas_ BALL::NumericalSAS
atom_array BALL::FDPB
atom_data BALL::NMRStarFile::NMRAtomDataSet
atom_data_sets_ BALL::NMRStarFile
atom_distance_ BALL::VIEW::FieldLineCreator
ATOM_EXACT_CHANGE BALL::MOLFile::Property
atom_forces_ BALL::SnapShot
atom_format_ BALL::MOLFile
atom_grid_ BALL::VIEW::ColorProcessor
atom_group BALL::NMRStarFile::ShiftReferenceElement
ATOM_H0_DESIGNATOR BALL::MOLFile::Property
ATOM_HYDROGEN_COUNT BALL::MOLFile::Property
atom_ID BALL::NMRStarFile::NMRAtomData
atom_infos_ BALL::Kekuliser
ATOM_INVERSION_RETENTION BALL::MOLFile::Property
atom_list_ BALL::JohnsonBoveyShiftProcessor
atom_map_ BALL::PDBFile
ATOM_MASS_DIFFERENCE BALL::MOLFile::Property
atom_name_A BALL::ResidueTorsions::Data
atom_name_B BALL::ResidueTorsions::Data
atom_name_C BALL::ResidueTorsions::Data
atom_name_D BALL::ResidueTorsions::Data
atom_name_in_current_strand BALL::PDB::RecordSHEET
atom_name_in_previous_strand BALL::PDB::RecordSHEET
atom_names BALL::JohnsonBoveyShiftProcessor::Ring
atom_nr_ BALL::AddHydrogenProcessor
atom_number_ BALL::VIEW::EditableScene
atom_overview_ BALL::VIEW::MolecularControl
atom_overview_selection_ BALL::VIEW::MolecularControl
atom_pair_vector_ BALL::MMFF94NonBonded
atom_pos_ BALL::VIEW::EditableScene
atom_positions_ BALL::SnapShot
ATOM_REACTION_COMPONENT_NUMBER BALL::MOLFile::Property
ATOM_REACTION_COMPONENT_TYPE BALL::MOLFile::Property
atom_set_ BALL::VIEW::AtomBondModelBaseProcessor
atom_status_ BALL::RSComputer
ATOM_STEREO_CARE_BOX BALL::MOLFile::Property
atom_surface_map_ BALL::NumericalSAS
atom_surfaces_ BALL::NumericalSAS
atom_to_block_ BALL::AssignBondOrderProcessor
atom_to_node_ BALL::TMolecularGraph
atom_to_test BALL::GAFFCESParser::CESPredicate
atom_to_tnode_ BALL::RingPerceptionProcessor
atom_to_virtual_bond_index_ BALL::AssignBondOrderProcessor
atom_type_normalization_factor BALL::AssignBondOrderProcessor::PQ_Entry_
atom_type_normalization_factor_ BALL::AssignBondOrderProcessor
atom_type_penalty BALL::AssignBondOrderProcessor::Solution_
atom_type_smarts_ BALL::HybridisationProcessor
atom_typer_ BALL::MMFF94
ATOM_VALENCE BALL::MOLFile::Property
atom_vector_ BALL::MolecularDynamics
atom_velocities_ BALL::SnapShot
atom_volumes_ BALL::NumericalSAS
AtomComparator BALL::SDGenerator
AtomDistanceHashMap BALL::VIEW::AtomDistanceColorProcessor
AtomEntry BALL::PDB::Structure::AtomEntry
AtomEntry BALL::PDB::Structure
atomic_coordinate_records BALL::PDB::BookKeeping
atomic_property BALL::GAFFTypeProcessor::TypeDefinition
atomic_radius_ BALL::Element
atomic_weight_ BALL::Element
AtomicNumber BALL::Element
AtomIndexArray BALL::PeriodicBoundary
AtomIndexList BALL::Atom
AtomIndexMap BALL::KCFFile
AtomIndexPair BALL::PeriodicBoundary
AtomInfo BALL::Kekuliser
AtomList BALL
AtomNames_ BALL::HybridisationProcessor
AtomOverview BALL::VIEW::AtomOverview
AtomOverview BALL::VIEW
AtomPair BALL::AtomBijection
AtomPtrList BALL::Atom
atoms_to_delete BALL::AssignBondOrderProcessor::Solution_
AtomStatus BALL::RSComputer
AtomStruct BALL::MOLFile
AtomStruct BALL::MOL2File
AtomTyper BALL
AtomTypes BALL
AtomVector BALL
attachBridged_ BALL::SDGenerator
attachCore_ BALL::SDGenerator
attached_hydrogens BALL::GAFFTypeProcessor::TypeDefinition
attachFused_ BALL::SDGenerator
attachSpiro_ BALL::SDGenerator
attachTemplate_ BALL::SDGenerator
attenuation_ BALL::VIEW::LightSource
Au BALL::Element
AURUM BALL::Element
authors BALL::PDB::RecordAUTHOR
AutomaticModelCreator BALL::QSAR::AutomaticModelCreator
autoScaleRequested BALL::VIEW::GridColorWidget
AuxFactors BALL::CanonicalMD
AuxFactors BALL::MicroCanonicalMD
average_ BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
AVERAGE_SECTION_NAME BALL::CreateSpectrumProcessor
AverageBondAngle_ BALL::HybridisationProcessor
averaging_ BALL::PolarSolvation
AVERAGING__NONE BALL::PolarSolvation
AVERAGING__RANDOM BALL::PolarSolvation
AVERAGING__RANDOM_FACTOR BALL::PolarSolvation
AVERAGING__STATIC BALL::PolarSolvation
AveragingMethod BALL::PolarSolvation
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