, including all inherited members.
| atom_format_ | BALL::MOLFile | [protected, static] |
| bond_format_ | BALL::MOLFile | [protected, static] |
| clear() | BALL::LineBasedFile | [virtual] |
| close() | BALL::File | |
| copy(String source_name, String destination_name, Size buffer_size=4096) | BALL::File | [static] |
| copyTo(const String &destination_name, Size buffer_size=4096) | BALL::File | |
| counts_format_ | BALL::MOLFile | [protected, static] |
| created_temp_filenames_ | BALL::File | [protected, static] |
| createTemporaryFilename(String &temporary, const String &suffix=".TMP") | BALL::File | [static] |
| disableAtoms() | BALL::SDFile | |
| disableTransformation(Transformation transformation) | BALL::File | [static] |
| enableAtoms() | BALL::SDFile | |
| enableTransformation(Transformation transformation) | BALL::File | [static] |
| enableTrimWhitespaces(bool state) | BALL::LineBasedFile | |
| File() | BALL::File | |
| File(const String &name, OpenMode open_mode=std::ios::in) | BALL::File | |
| GenericMolFile() | BALL::GenericMolFile | |
| GenericMolFile(const String &filename, File::OpenMode open_mode=std::ios::in) | BALL::GenericMolFile | |
| getField(Index pos=0, const String "es="", const String &delimiters=String::CHARACTER_CLASS__WHITESPACE) const | BALL::LineBasedFile | |
| getFileStream() | BALL::File | |
| getLine() const | BALL::LineBasedFile | |
| getLine() | BALL::LineBasedFile | |
| getLineNumber() const | BALL::LineBasedFile | |
| getName() const | BALL::File | |
| getOpenMode() const | BALL::File | |
| getOriginalName() const | BALL::File | |
| getSize() | BALL::File | |
| getSize(String name) | BALL::File | [static] |
| getTransformationManager() | BALL::File | |
| getTransformationManager() const | BALL::File | |
| getType(String name, bool trace_link) | BALL::File | [static] |
| getType(bool trace_link) const | BALL::File | |
| gotoLine(Position line_number) | BALL::LineBasedFile | |
| has(const String &text) const | BALL::LineBasedFile | |
| initRead_() | BALL::GenericMolFile | [protected, virtual] |
| initWrite_() | BALL::GenericMolFile | [protected, virtual] |
| is_open_ | BALL::File | [protected] |
| is_temporary_ | BALL::File | [protected] |
| isAccessible(String name) | BALL::File | [static] |
| isAccessible() const | BALL::File | |
| isCanonized() const | BALL::File | |
| isClosed() const | BALL::File | |
| isExecutable(String name) | BALL::File | [static] |
| isExecutable() const | BALL::File | |
| isOpen() const | BALL::File | |
| isReadable(String name) | BALL::File | [static] |
| isReadable() const | BALL::File | |
| isTransformationEnabled(Transformation transformation) | BALL::File | [static] |
| isValid() const | BALL::File | |
| isWritable(String name) | BALL::File | [static] |
| isWritable() const | BALL::File | |
| line_ | BALL::LineBasedFile | [protected] |
| line_number_ | BALL::LineBasedFile | [protected] |
| LineBasedFile() | BALL::LineBasedFile | |
| LineBasedFile(const String &filename, File::OpenMode open_mode=std::ios::in, bool trim_whitespaces=false) | BALL::LineBasedFile | |
| MODE_APP | BALL::File | [static] |
| MODE_ATE | BALL::File | [static] |
| MODE_BINARY | BALL::File | [static] |
| MODE_IN | BALL::File | [static] |
| MODE_OUT | BALL::File | [static] |
| MODE_TRUNC | BALL::File | [static] |
| MOLFile() | BALL::MOLFile | |
| MOLFile(const String &filename, File::OpenMode open_mode=std::ios::in) | BALL::MOLFile | |
| move(const String &source_name, const String &destination_name) | BALL::File | [static] |
| moveTo(const String &destination_name) | BALL::File | |
| name_ | BALL::File | [protected] |
| open(const String &name, File::OpenMode open_mode=std::ios::in) | BALL::File | |
| open_mode_ | BALL::File | [protected] |
| OpenMode typedef | BALL::File | |
| operator!=(const LineBasedFile &f) | BALL::LineBasedFile | |
| BALL::File::operator!=(const File &file) const | BALL::File | |
| operator<<(const System &system) | BALL::GenericMolFile | [virtual] |
| operator<<(const Molecule &molecule) | BALL::GenericMolFile | [virtual] |
| operator=(const SDFile &file) | BALL::SDFile | |
| BALL::MOLFile::operator=(const MOLFile &file) | BALL::MOLFile | |
| BALL::GenericMolFile::operator=(const GenericMolFile &rhs) | BALL::GenericMolFile | |
| BALL::LineBasedFile::operator=(const LineBasedFile &file) | BALL::LineBasedFile | |
| operator==(const LineBasedFile &f) | BALL::LineBasedFile | |
| BALL::File::operator==(const File &file) const | BALL::File | |
| operator>>(System &system) | BALL::GenericMolFile | [virtual] |
| operator>>(Molecule &molecule) | BALL::GenericMolFile | [virtual] |
| original_name_ | BALL::File | [protected] |
| parseColumnFormat(const char *format, Position index, Size length, void *arg) | BALL::LineBasedFile | |
| read(System &system) | BALL::SDFile | [virtual] |
| read() | BALL::SDFile | [virtual] |
| read_atoms_ | BALL::SDFile | [protected] |
| readAtomLine_(AtomStruct &atom) | BALL::MOLFile | [protected] |
| readBondLine_(BondStruct &bond) | BALL::MOLFile | [protected] |
| readCountsLine_(CountsStruct &counts) | BALL::MOLFile | [protected] |
| readCTAB_(std::vector< Atom * > &atom_map) | BALL::MOLFile | [protected] |
| readLine() | BALL::LineBasedFile | |
| readPropertyBlock_(Molecule &molecule) | BALL::SDFile | [protected] |
| registerTransformation(const String &pattern, const String &exec) | BALL::File | [static] |
| remove(String name) | BALL::File | [static] |
| remove() | BALL::File | |
| rename(String old_path, String new_path) | BALL::File | [static] |
| renameTo(const String &new_path) | BALL::File | |
| reopen() | BALL::File | |
| reopen(File::OpenMode open_mode) | BALL::File | |
| rewind() | BALL::LineBasedFile | |
| SDFile() | BALL::SDFile | |
| SDFile(const String &filename, File::OpenMode open_mode=std::ios::in) | BALL::SDFile | |
| search(const String &text, bool return_to_start=false) | BALL::LineBasedFile | |
| search(const String &text, const String &stop, bool return_to_start=false) | BALL::LineBasedFile | |
| setName(const String &name) | BALL::File | |
| skipLines(Size number=1) | BALL::LineBasedFile | |
| startsWith(const String &text) const | BALL::LineBasedFile | |
| switchString(const std::vector< String > &data) const | BALL::LineBasedFile | |
| test(const char *file, int line, bool condition, const String &msg) const | BALL::LineBasedFile | |
| Transformation enum name | BALL::File | |
| TRANSFORMATION__EXEC enum value | BALL::File | |
| TRANSFORMATION__FILTER enum value | BALL::File | |
| TRANSFORMATION__URL enum value | BALL::File | |
| TRANSFORMATION_EXEC_PREFIX | BALL::File | [static] |
| TRANSFORMATION_FILE_PREFIX | BALL::File | [static] |
| TRANSFORMATION_FTP_PREFIX | BALL::File | [static] |
| TRANSFORMATION_HTTP_PREFIX | BALL::File | [static] |
| transformation_manager_ | BALL::File | [protected, static] |
| transformation_methods_ | BALL::File | [protected, static] |
| trim_whitespaces_ | BALL::LineBasedFile | [protected] |
| trimWhiteSpacesEnabled() const | BALL::LineBasedFile | |
| truncate(String path, Size size=0) | BALL::File | [static] |
| truncate(Size size=0) | BALL::File | |
| Type enum name | BALL::File | |
| TYPE__BLOCK_SPECIAL_FILE enum value | BALL::File | |
| TYPE__CHAR_SPECIAL_FILE enum value | BALL::File | |
| TYPE__DIRECTORY enum value | BALL::File | |
| TYPE__FIFO_SPECIAL_FILE enum value | BALL::File | |
| TYPE__REGULAR_FILE enum value | BALL::File | |
| TYPE__SOCKET enum value | BALL::File | |
| TYPE__SYMBOLIC_LINK enum value | BALL::File | |
| TYPE__UNKNOWN enum value | BALL::File | |
| unregisterTransformation(const String &pattern) | BALL::File | [static] |
| write(const System &system) | BALL::SDFile | [virtual] |
| write(const Molecule &molecule) | BALL::SDFile | [virtual] |
| writeAtomLine_(const AtomStruct &atom) | BALL::MOLFile | [protected] |
| writeBondLine_(const BondStruct &bond) | BALL::MOLFile | [protected] |
| writeCountsLine_(const CountsStruct &counts) | BALL::MOLFile | [protected] |
| writePropertyBlock_(const Molecule &molecule) | BALL::SDFile | [protected] |
| ~File() | BALL::File | [virtual] |
| ~GenericMolFile() | BALL::GenericMolFile | [virtual] |
| ~MOLFile() | BALL::MOLFile | [virtual] |
| ~SDFile() | BALL::SDFile | [virtual] |
1.6.3
