| AmberNonBonded() | AmberNonBonded | |
| AmberNonBonded(ForceField &force_field) | AmberNonBonded | |
| AmberNonBonded(const AmberNonBonded &amber_non_bonded) | AmberNonBonded | |
| buildVectorOfNonBondedAtomPairs(const std::vector< std::pair< Atom *, Atom * > > &atom_vector, const LennardJones &lennard_jones, const Potential1210 &hydrogen_bond) | AmberNonBonded | [virtual] |
| clear() | AmberNonBonded | [virtual] |
| determineMethodOfAtomPairGeneration() | AmberNonBonded | [virtual] |
| electrostatic_energy_ (defined in AmberNonBonded) | AmberNonBonded | [protected] |
| energy_ (defined in ForceFieldComponent) | ForceFieldComponent | [protected] |
| force_field_ (defined in ForceFieldComponent) | ForceFieldComponent | [protected] |
| ForceFieldComponent() | ForceFieldComponent | |
| ForceFieldComponent(ForceField &force_field) | ForceFieldComponent | |
| ForceFieldComponent(const ForceFieldComponent &force_field_component) | ForceFieldComponent | |
| getElectrostaticEnergy() const | AmberNonBonded | [virtual] |
| getEnergy() const | ForceFieldComponent | [virtual] |
| getForceField() const | ForceFieldComponent | |
| getName() const | ForceFieldComponent | |
| getVdwEnergy() const | AmberNonBonded | [virtual] |
| isEnabled() const (defined in ForceFieldComponent) | ForceFieldComponent | |
| operator=(const AmberNonBonded &anb) | AmberNonBonded | |
| operator==(const AmberNonBonded &anb) | AmberNonBonded | |
| setEnabled(bool state) (defined in ForceFieldComponent) | ForceFieldComponent | |
| setForceField(ForceField &force_field) | ForceFieldComponent | |
| setName(const String &name) | ForceFieldComponent | |
| setup() | AmberNonBonded | [virtual] |
| update() | AmberNonBonded | [virtual] |
| updateEnergy() | AmberNonBonded | [virtual] |
| updateForces() | AmberNonBonded | [virtual] |
| vdw_energy_ (defined in AmberNonBonded) | AmberNonBonded | [protected] |
| ~AmberNonBonded() | AmberNonBonded | [virtual] |
| ~ForceFieldComponent() | ForceFieldComponent | [virtual] |