| assignBackboneAtoms(AtomContainer &A, AtomContainer &B) | AtomBijection | |
| assignByName(AtomContainer &A, AtomContainer &B) | AtomBijection | |
| assignCAlphaAtoms(AtomContainer &A, AtomContainer &B) | AtomBijection | |
| assignTrivial(AtomContainer &A, AtomContainer &B) | AtomBijection | |
| AtomBijection() | AtomBijection | |
| AtomBijection(AtomContainer &A, AtomContainer &B) | AtomBijection | |
| AtomPair typedef | AtomBijection | |
| calculateRMSD() const | AtomBijection | |
| PairVector typedef (defined in AtomBijection) | AtomBijection | |
| ~AtomBijection() | AtomBijection | [virtual] |