| AtomVector() | AtomVector | |
| AtomVector(const Composite &composite, bool selected_only=false) | AtomVector | |
| AtomVector(const AtomVector &atoms, bool deep=true) | AtomVector | |
| begin() | AtomVector | |
| begin() const (defined in AtomVector) | AtomVector | |
| ConstIterator typedef | AtomVector | |
| end() | AtomVector | |
| end() const (defined in AtomVector) | AtomVector | |
| Iterator typedef | AtomVector | |
| moveTo(const Gradient &direction, double step=1.0) | AtomVector | |
| moveTo(const Gradient &direction, double step, Size k) | AtomVector | |
| operator=(const AtomVector &rhs) | AtomVector | |
| operator=(const Composite &rhs) | AtomVector | |
| operator[](int i) | AtomVector | |
| operator[](int i) const (defined in AtomVector) | AtomVector | |
| resetPositions() | AtomVector | |
| resize(Size new_size) | AtomVector | |
| saved_position_ (defined in AtomVector) | AtomVector | [protected] |
| savePositions() | AtomVector | |
| set(const AtomVector &atoms) | AtomVector | |
| set(const Composite &composite, bool selected_only=false) | AtomVector | |
| ~AtomVector() | AtomVector | [virtual] |