Bond Member List

This is the complete list of members for Bond, including all inherited members.

AncestorConstIterator typedef (defined in Composite)	Composite
AncestorIterator typedef (defined in Composite)	Composite
AncestorIteratorTraits (defined in Composite)	Composite	[friend]
appendChild(Composite &composite)	Composite
apply(UnaryProcessor< T > &processor)	Composite
applyAncestor(UnaryProcessor< T > &processor)	Composite
applyChild(UnaryProcessor< T > &processor)	Composite
applyDescendant(UnaryProcessor< T > &processor)	Composite
applyDescendantPostorder(UnaryProcessor< T > &processor)	Composite
applyDescendantPreorder(UnaryProcessor< T > &processor)	Composite
applyLevel(UnaryProcessor< T > &processor, long level)	Composite
applyPostorder(UnaryProcessor< T > &processor)	Composite
applyPreorder(UnaryProcessor< T > &processor)	Composite
Atom (defined in Bond)	Bond	[friend]
AutoDeletable() (defined in AutoDeletable)	AutoDeletable	[protected]
AutoDeletable(const AutoDeletable &auto_deletable, bool deep=false) (defined in AutoDeletable)	AutoDeletable	[protected]
beginAncestor() (defined in Composite)	Composite
beginAncestor() const (defined in Composite)	Composite
beginChildComposite() (defined in Composite)	Composite
beginChildComposite() const (defined in Composite)	Composite
beginComposite() (defined in Composite)	Composite
beginComposite() const (defined in Composite)	Composite
Bond()	Bond
Bond(const Bond &bond, bool deep=true)	Bond
Bond(const String &name, Atom &first, Atom &second, Order order=BALL_BOND_DEFAULT_ORDER, Type type=BALL_BOND_DEFAULT_TYPE)	Bond
bond_order_ (defined in Bond)	Bond	[protected]
bond_type_ (defined in Bond)	Bond	[protected]
BondOrder enum name	Bond
BondType enum name	Bond
BOTH enum value (defined in Composite)	Composite
ChildCompositeConstIterator typedef (defined in Composite)	Composite
ChildCompositeConstReverseIterator typedef (defined in Composite)	Composite
ChildCompositeIterator typedef (defined in Composite)	Composite
ChildCompositeIteratorTraits (defined in Composite)	Composite	[friend]
ChildCompositeReverseIterator typedef (defined in Composite)	Composite
clear()	Bond	[virtual]
clearLastPtr() (defined in AutoDeletable)	AutoDeletable	[static]
clearProperty(Property property)	PropertyManager
clearProperty(const string &name)	PropertyManager
clone(Composite &root) const	Composite
compare(const Object &object) const	Object
Composite()	Composite
Composite(const Composite &composite, bool deep=true)	Composite
CompositeConstIterator typedef (defined in Composite)	Composite
CompositeConstReverseIterator typedef (defined in Composite)	Composite
CompositeIterator typedef (defined in Composite)	Composite
CompositeIteratorTraits (defined in Composite)	Composite	[friend]
CompositeReverseIterator typedef (defined in Composite)	Composite
containsSelection() const	Composite
count(const KernelPredicateType &predicate) const	Composite
countDescendants() const	Composite
countNamedProperties() const	PropertyManager
countProperties() const	PropertyManager
createBond(Bond &bond, Atom &first, Atom &second)	Bond	[static]
DEFAULT_PROCESSOR (defined in Composite)	Composite	[static]
DEFAULT_UNARY_PREDICATE (defined in Composite)	Composite	[static]
deselect()	Composite	[virtual]
destroy()	Bond	[virtual]
Composite::destroy(bool virtual_destroy)	Composite
dump(std::ostream &s=std::cout, Size depth=0) const	Bond	[virtual]
dump(::std::ostream &s=std::cout, Size depth=0) const (defined in Object)	Object	[virtual]
dump(::std::ostream &s=std::cout, Size depth=0) const (defined in Selectable)	Selectable	[virtual]
endAncestor() (defined in Composite)	Composite
endAncestor() const (defined in Composite)	Composite
endChildComposite() (defined in Composite)	Composite
endChildComposite() const (defined in Composite)	Composite
endComposite() (defined in Composite)	Composite
endComposite() const (defined in Composite)	Composite
finalize()	Bond	[virtual]
first_ (defined in Bond)	Bond	[protected]
get(Composite &composite, bool deep=true) const	Composite
Selectable::get(Selectable &selectable, bool deep=true) const	Selectable
PropertyManager::get(PropertyManager &property_manager) const	PropertyManager
getAncestor(const T &)	Composite
getAncestor(const T &) const	Composite
getBitVector()	PropertyManager
getBitVector() const	PropertyManager
getBoundAtom(const Atom &atom) const	Bond
getChild(Index index)	Composite
getChild(Index index) const	Composite
getDegree() const	Composite
getDepth() const	Composite
getFirstAtom() const	Bond
getFirstChild()	Composite
getFirstChild() const	Composite
getHandle() const	Object
getHeight() const	Composite
getLastChild()	Composite
getLastChild() const	Composite
getLength() const	Bond
getLowestCommonAncestor(const Composite &composite)	Composite
getLowestCommonAncestor(const Composite &composite) const	Composite
getModificationTime() const	Composite
getName() const	Bond
getNamedProperty(Position index) const	PropertyManager
getNamedProperty(Position index)	PropertyManager
getNewHandle()	Object	[static]
getNext(const T &)	Composite
getNext(const T &dummy) const	Composite
getNextHandle()	Object	[static]
getOrder() const	Bond
getParent()	Composite
getParent() const	Composite
getPartner(const Atom &atom) const	Bond
getPathLength(const Composite &composite) const	Composite
getPrevious(const T &)	Composite
getPrevious(const T &dummy) const	Composite
getProperty(const string &name) const	PropertyManager
getRoot()	Composite
getRoot() const	Composite
getSecondAtom() const	Bond
getSelectionTime() const	Composite
getSibling(Index index)	Composite
getSibling(Index index) const	Composite
getType() const	Bond
hasAncestor(const T &dummy) const	Composite
hasChild() const	Composite
hasNextSibling() const	Composite
hasParent() const	Composite
hasPreviousSibling() const	Composite
hasProperty(Property property) const	PropertyManager
hasProperty(const string &name) const	PropertyManager
hasSibling() const	Composite
host(Visitor< Composite > &visitor)	Composite
insertAfter(Composite &composite)	Composite
insertBefore(Composite &composite)	Composite
insertParent(Composite &parent, Composite &first, Composite &last, bool destroy_parent=true)	Composite	[static]
isAncestorOf(const Composite &composite) const	Composite
isAutoDeletable() const	AutoDeletable
isBondOf(const Atom &atom) const	Bond
isBound() const	Bond
isChildOf(const Composite &composite) const	Composite
isDescendantOf(const Composite &composite) const	Composite
isEmpty() const	Composite
isFirstChild() const	Composite
isFirstChildOf(const Composite &composite) const	Composite
isHomomorph(const Composite &composite) const	Composite
isInterBond() const	Bond
isInterBondOf(const AtomContainer &atom_container) const	Bond
isInterior() const	Composite
isIntraBond() const	Bond
isIntraBondOf(const AtomContainer &atom_container) const	Bond
isLastChild() const	Composite
isLastChildOf(const Composite &composite) const	Composite
isNextSiblingOf(const Composite &composite) const	Composite
isParentOf(const Composite &composite) const	Composite
isPreviousSiblingOf(const Composite &composite) const	Composite
isRelatedWith(const Composite &composite) const	Composite
isRoot() const	Composite
isRootOf(const Composite &composite) const	Composite
isSelected() const	Selectable
isSiblingOf(const Composite &composite) const	Composite
isValid() const	Bond	[virtual]
KernelPredicateType typedef	Composite
MODIFICATION enum value (defined in Composite)	Composite
name_ (defined in Bond)	Bond	[protected]
NUMBER_OF_BOND_ORDERS enum value	Bond
NUMBER_OF_BOND_TYPES enum value (defined in Bond)	Bond
NUMBER_OF_PROPERTIES enum value (defined in Bond)	Bond
Object()	Object
Object(const Object &object)	Object
operator BitVector &()	PropertyManager
operator delete(void *ptr)	AutoDeletable
operator delete(void *ptr, void *)	AutoDeletable
operator new(size_t size)	AutoDeletable
operator new(size_t size, void *ptr)	AutoDeletable
operator!=(const Bond &bond) const	Bond
Composite::operator!=(const Composite &composite) const	Composite
PersistentObject::operator!=(const Object &object) const	Object
Selectable::operator!=(const Selectable &selectable) const	Selectable
PropertyManager::operator!=(const PropertyManager &pm) const	PropertyManager
operator<(const Object &object) const	Object
operator<=(const Object &object) const	Object
operator=(const Bond &bond)	Bond
Composite::operator=(const Composite &composite)	Composite
PersistentObject::operator=(const Object &)	Object
Selectable::operator=(const Selectable &selectable)	Selectable
PropertyManager::operator=(const PropertyManager &property_manager)	PropertyManager
operator==(const Bond &bond) const	Bond
Composite::operator==(const Composite &composite) const	Composite
PersistentObject::operator==(const Object &object) const	Object
Selectable::operator==(const Selectable &selectable) const	Selectable
PropertyManager::operator==(const PropertyManager &pm) const	PropertyManager
operator>(const Object &object) const	Object
operator>=(const Object &object) const	Object
operator>>(PersistenceManager &pm) const	PersistentObject
Order typedef	Bond
ORDER__ANY enum value	Bond
ORDER__AROMATIC enum value	Bond
ORDER__DOUBLE enum value	Bond
ORDER__QUADRUPLE enum value	Bond
ORDER__SINGLE enum value	Bond
ORDER__TRIPLE enum value	Bond
ORDER__UNKNOWN enum value	Bond
PersistentObject()	PersistentObject
persistentRead(PersistenceManager &pm)	Bond	[virtual]
persistentWrite(PersistenceManager &pm, const char *name=0) const	Bond	[virtual]
prependChild(Composite &composite)	Composite
Property enum name	Bond
PropertyManager()	PropertyManager
PropertyManager(const PropertyManager &property_manager)	PropertyManager
rbeginChildComposite() (defined in Composite)	Composite
rbeginChildComposite() const (defined in Composite)	Composite
rbeginComposite() (defined in Composite)	Composite
rbeginComposite() const (defined in Composite)	Composite
read(PersistenceManager &pm)	Selectable
PropertyManager::read(PersistenceManager &pm)	PropertyManager
removeChild(Composite &child)	Composite
removeSelected()	Composite
rendChildComposite() (defined in Composite)	Composite
rendChildComposite() const (defined in Composite)	Composite
rendComposite() (defined in Composite)	Composite
rendComposite() const (defined in Composite)	Composite
replace(Composite &composite)	Composite
second_ (defined in Bond)	Bond	[protected]
select()	Composite	[virtual]
Selectable()	Selectable
Selectable(const Selectable &selectable, bool deep=true)	Selectable
selected_ (defined in Selectable)	Selectable	[protected]
SELECTION enum value (defined in Composite)	Composite
set(const Composite &composite, bool deep=true)	Composite
Selectable::set(const Selectable &selectable, bool deep=true)	Selectable
PropertyManager::set(const PropertyManager &property_manager)	PropertyManager
setAutoDeletable(bool enable)	AutoDeletable
setFirstAtom(Atom *atom)	Bond
setName(const String &name)	Bond
setOrder(Order bond_order)	Bond
setProperty(Property property)	PropertyManager
setProperty(const NamedProperty &property)	PropertyManager
setProperty(const string &name)	PropertyManager
setProperty(const string &name, bool value)	PropertyManager
setProperty(const string &name, int value)	PropertyManager
setProperty(const string &name, unsigned int value)	PropertyManager
setProperty(const string &name, float value)	PropertyManager
setProperty(const string &name, double value)	PropertyManager
setProperty(const string &name, const string &value)	PropertyManager
setProperty(const string &name, const PersistentObject &value)	PropertyManager
setSecondAtom(Atom *atom)	Bond
setSelected(bool selected)	Selectable	[virtual]
setType(Type bond_type)	Bond
splice(Composite &composite)	Composite
spliceAfter(Composite &composite)	Composite
spliceBefore(Composite &composite)	Composite
stamp(StampType stamp=BOTH)	Composite
StampType enum name	Composite
swap(Bond &bond)	Bond
Composite::swap(Composite &composite)	Composite
Selectable::swap(Selectable &selectable)	Selectable
PropertyManager::swap(PropertyManager &property_manager)	PropertyManager
toggleProperty(Property property)	PropertyManager
Type typedef (defined in Bond)	Bond
TYPE__COVALENT enum value (defined in Bond)	Bond
TYPE__DISULPHIDE_BRIDGE enum value (defined in Bond)	Bond
TYPE__HYDROGEN enum value (defined in Bond)	Bond
TYPE__PEPTIDE enum value (defined in Bond)	Bond
TYPE__SALT_BRIDGE enum value (defined in Bond)	Bond
TYPE__UNKNOWN enum value (defined in Bond)	Bond
write(PersistenceManager &pm) const	Selectable
PropertyManager::write(PersistenceManager &pm) const	PropertyManager
~AutoDeletable()	AutoDeletable	[virtual]
~Bond()	Bond	[virtual]
~Composite()	Composite	[virtual]
~Object()	Object	[virtual]
~PersistentObject()	PersistentObject	[virtual]
~PropertyManager()	PropertyManager	[virtual]
~Selectable()	Selectable	[virtual]