| calculateEnergy() | GeneralizedBornModel | |
| calculatePotential(HashMap< const Atom *, float > &p_hash) const | GeneralizedBornModel | |
| calculatePotential(const Atom &atom_i) const | GeneralizedBornModel | |
| calculateSolvationEnergy() | GeneralizedBornModel | |
| clear() (defined in GeneralizedBornModel) | GeneralizedBornModel | |
| GeneralizedBornModel() (defined in GeneralizedBornModel) | GeneralizedBornModel | |
| getScalingFactors() const (defined in GeneralizedBornModel) | GeneralizedBornModel | |
| readScalingFactors(const String &inifile_name) (defined in GeneralizedBornModel) | GeneralizedBornModel | |
| setScalingFactorFile(const String &filename) | GeneralizedBornModel | |
| setScalingFactors(const StringHashMap< float > &scaling_factors) (defined in GeneralizedBornModel) | GeneralizedBornModel | |
| setSoluteDC(float solute_dc) | GeneralizedBornModel | |
| setSolventDC(float solvent_dc) | GeneralizedBornModel | |
| setup(const AtomContainer &ac) | GeneralizedBornModel | |
| ~GeneralizedBornModel() (defined in GeneralizedBornModel) | GeneralizedBornModel |