GenericMolFile Member List

This is the complete list of members for GenericMolFile, including all inherited members.

clear()	LineBasedFile	[virtual]
close()	File
copy(String source_name, String destination_name, Size buffer_size=4096)	File	[static]
copyTo(const String &destination_name, Size buffer_size=4096)	File
createTemporaryFilename(String &temporary)	File	[static]
disableTransformation(Transformation transformation) (defined in File)	File	[static]
enableTransformation(Transformation transformation) (defined in File)	File	[static]
enableTrimWhitespaces(bool state)	LineBasedFile
File()	File
File(const String &name, OpenMode open_mode=std::ios::in)	File
File(const File &file)	File
GenericMolFile()	GenericMolFile
GenericMolFile(const String &filename, File::OpenMode open_mode=std::ios::in)	GenericMolFile
GenericMolFile(const GenericMolFile &file)	GenericMolFile
getField(Index pos=0, const String &quotes="", const String &delimiters=String::CHARACTER_CLASS__WHITESPACE) const	LineBasedFile
getFileStream()	File
getLine() const	LineBasedFile
getLine()	LineBasedFile
getLineNumber() const	LineBasedFile
getName() const	File
getOpenMode() const	File
getOriginalName() const (defined in File)	File
getSize()	File
getSize(String name)	File	[static]
getTransformationManager()	File
getTransformationManager() const	File
getType(String name, bool trace_link)	File	[static]
getType(bool trace_link) const	File
gotoLine(Position line_number)	LineBasedFile
has(const String &text) const	LineBasedFile
initRead_()	GenericMolFile	[protected, virtual]
initWrite_()	GenericMolFile	[protected, virtual]
is_open_ (defined in File)	File	[protected]
is_temporary_ (defined in File)	File	[protected]
isAccessible(String name)	File	[static]
isAccessible() const	File
isCanonized() const	File
isClosed() const	File
isExecutable(String name)	File	[static]
isExecutable() const	File
isOpen() const	File
isReadable(String name)	File	[static]
isReadable() const	File
isTransformationEnabled(Transformation transformation) (defined in File)	File	[static]
isValid() const	File
isWritable(String name)	File	[static]
isWritable() const	File
line_	LineBasedFile	[protected]
line_number_	LineBasedFile	[protected]
LineBasedFile()	LineBasedFile
LineBasedFile(const String &filename, File::OpenMode open_mode=std::ios::in, bool trim_whitespaces=false)	LineBasedFile
LineBasedFile(const LineBasedFile &f)	LineBasedFile
MODE_APP	File	[static]
MODE_ATE	File	[static]
MODE_BINARY	File	[static]
MODE_IN	File	[static]
MODE_OUT	File	[static]
MODE_TRUNC	File	[static]
move(const String &source_name, const String &destination_name)	File	[static]
moveTo(const String &destination_name)	File
name_ (defined in File)	File	[protected]
open(const String &name, File::OpenMode open_mode=std::ios::in)	File
open_mode_ (defined in File)	File	[protected]
OpenMode typedef	File
operator!=(const LineBasedFile &f)	LineBasedFile
File::operator!=(const File &file) const	File
operator<<(const System &system)	GenericMolFile	[virtual]
operator<<(const Molecule &molecule)	GenericMolFile	[virtual]
operator=(const GenericMolFile &rhs)	GenericMolFile
LineBasedFile::operator=(const LineBasedFile &file)	LineBasedFile
File::operator=(const File &file)	File
operator==(const LineBasedFile &f)	LineBasedFile
File::operator==(const File &file) const	File
operator>>(System &system)	GenericMolFile	[virtual]
operator>>(Molecule &molecule)	GenericMolFile	[virtual]
original_name_ (defined in File)	File	[protected]
parseColumnFormat(const char *format, Position index, Size length, void *arg)	LineBasedFile
read(System &system)	GenericMolFile	[virtual]
read()	GenericMolFile	[virtual]
readLine()	LineBasedFile
registerTransformation(const String &pattern, const String &exec) (defined in File)	File	[static]
remove(String name)	File	[static]
remove()	File
rename(String old_path, String new_path)	File	[static]
renameTo(const String &new_path)	File
reopen()	File
reopen(File::OpenMode open_mode)	File
rewind()	LineBasedFile
search(const String &text, bool return_to_start=false)	LineBasedFile
search(const String &text, const String &stop, bool return_to_start=false) (defined in LineBasedFile)	LineBasedFile
setName(const String &name)	File
skipLines(Size number=1)	LineBasedFile
startsWith(const String &text) const	LineBasedFile
switchString(const std::vector< String > &data) const	LineBasedFile
test(const char *file, int line, bool condition, const String &msg) const	LineBasedFile
Transformation enum name	File
TRANSFORMATION__EXEC enum value (defined in File)	File
TRANSFORMATION__FILTER enum value (defined in File)	File
TRANSFORMATION__URL enum value (defined in File)	File
TRANSFORMATION_EXEC_PREFIX	File	[static]
TRANSFORMATION_FILE_PREFIX	File	[static]
TRANSFORMATION_FTP_PREFIX	File	[static]
TRANSFORMATION_HTTP_PREFIX	File	[static]
transformation_manager_ (defined in File)	File	[protected, static]
transformation_methods_ (defined in File)	File	[protected, static]
trim_whitespaces_ (defined in LineBasedFile)	LineBasedFile	[protected]
trimWhiteSpacesEnabled() const (defined in LineBasedFile)	LineBasedFile
truncate(String path, Size size=0)	File	[static]
truncate(Size size=0)	File
Type enum name	File
TYPE__BLOCK_SPECIAL_FILE enum value (defined in File)	File
TYPE__CHAR_SPECIAL_FILE enum value (defined in File)	File
TYPE__DIRECTORY enum value (defined in File)	File
TYPE__FIFO_SPECIAL_FILE enum value (defined in File)	File
TYPE__REGULAR_FILE enum value (defined in File)	File
TYPE__SOCKET enum value (defined in File)	File
TYPE__SYMBOLIC_LINK enum value (defined in File)	File
TYPE__UNKNOWN enum value (defined in File)	File
unregisterTransformation(const String &pattern) (defined in File)	File	[static]
write(const System &system)	GenericMolFile	[virtual]
write(const Molecule &molecule)	GenericMolFile	[virtual]
~File()	File	[virtual]
~GenericMolFile()	GenericMolFile	[virtual]