, including all inherited members.
| calculateBendEmpericalForceConstant(Atom &atom1, Atom &atom2, Atom &atom3, double angle_0) const | MMFF94StretchBend | |
| calculateBendEmpericalReferenceAngle(Atom &atom1, Atom &atom2, Atom &atom3) const | MMFF94StretchBend | |
| calculateSBTIJK(Position angle_type, bool bond_type1, bool bond_type2) (defined in MMFF94StretchBend) | MMFF94StretchBend | |
| calculateStretchConstant(const Bond &bond, double r0) (defined in MMFF94StretchBend) | MMFF94StretchBend | |
| calculateStretchR0(const Bond &bond) | MMFF94StretchBend | |
| energy_ (defined in ForceFieldComponent) | ForceFieldComponent | [protected] |
| force_field_ (defined in ForceFieldComponent) | ForceFieldComponent | [protected] |
| ForceFieldComponent() | ForceFieldComponent | |
| ForceFieldComponent(ForceField &force_field) | ForceFieldComponent | |
| ForceFieldComponent(const ForceFieldComponent &force_field_component) | ForceFieldComponent | |
| getBendEnergy() const (defined in MMFF94StretchBend) | MMFF94StretchBend | |
| getBends() const (defined in MMFF94StretchBend) | MMFF94StretchBend | |
| getBendType(const Bond &bond1, const Bond &bond2, Atom &atom1, Atom &atom2, Atom &atom3) const (defined in MMFF94StretchBend) | MMFF94StretchBend | |
| getEnergy() const | ForceFieldComponent | [virtual] |
| getForceField() const | ForceFieldComponent | |
| getName() const | ForceFieldComponent | |
| getStretchBendEnergy() const (defined in MMFF94StretchBend) | MMFF94StretchBend | |
| getStretchBends() const (defined in MMFF94StretchBend) | MMFF94StretchBend | |
| getStretchEnergy() const (defined in MMFF94StretchBend) | MMFF94StretchBend | |
| getStretches() const (defined in MMFF94StretchBend) | MMFF94StretchBend | |
| isEnabled() const (defined in ForceFieldComponent) | ForceFieldComponent | |
| MMFF94StretchBend() | MMFF94StretchBend | |
| MMFF94StretchBend(ForceField &force_field) | MMFF94StretchBend | |
| MMFF94StretchBend(const MMFF94StretchBend &to_copy) | MMFF94StretchBend | |
| setEnabled(bool state) (defined in ForceFieldComponent) | ForceFieldComponent | |
| setForceField(ForceField &force_field) | ForceFieldComponent | |
| setName(const String &name) | ForceFieldComponent | |
| setup() | MMFF94StretchBend | [virtual] |
| update() | ForceFieldComponent | [virtual] |
| updateBendEnergy() (defined in MMFF94StretchBend) | MMFF94StretchBend | [virtual] |
| updateBendForces() (defined in MMFF94StretchBend) | MMFF94StretchBend | [virtual] |
| updateEnergy() | MMFF94StretchBend | [virtual] |
| updateForces() | MMFF94StretchBend | [virtual] |
| updateStretchBendEnergy() (defined in MMFF94StretchBend) | MMFF94StretchBend | [virtual] |
| updateStretchBendForces() (defined in MMFF94StretchBend) | MMFF94StretchBend | [virtual] |
| updateStretchEnergy() (defined in MMFF94StretchBend) | MMFF94StretchBend | [virtual] |
| updateStretchForces() (defined in MMFF94StretchBend) | MMFF94StretchBend | [virtual] |
| ~ForceFieldComponent() | ForceFieldComponent | [virtual] |
| ~MMFF94StretchBend() | MMFF94StretchBend | [virtual] |