, including all inherited members.
all_torsions_ (defined in ResidueTorsions) | ResidueTorsions | [protected] |
assignTorsion(const String &name, Position i, Data &torsion) const | ResidueTorsions | |
clear() | ResidueTorsions | [virtual] |
entries_ (defined in ParameterSection) | ParameterSection | [protected] |
extractSection(ForceFieldParameters ¶meters, const String §ion_name) | ResidueTorsions | [virtual] |
extractSection(Parameters ¶meters, const String §ion_name) | ResidueTorsions | [virtual] |
format_line_ (defined in ParameterSection) | ParameterSection | [protected] |
getColumnIndex(const String &variable) const | ParameterSection | |
getKey(Position key_index) const | ParameterSection | |
getNumberOfKeys() const | ParameterSection | |
getNumberOfResidueTorsions(const String &residue_name) const | ResidueTorsions | |
getNumberOfVariables() const | ParameterSection | |
getSectionName() const | ParameterSection | |
getValue(const String &key, const String &variable) const | ParameterSection | |
getValue(Position key_index, Position variable_index) const | ParameterSection | |
has(const String &key, const String &variable) const | ParameterSection | |
has(const String &key) const | ParameterSection | |
hasTorsion(const String &residue, const String &atom_A, const String &atom_B, const String &atom_C, const String &atom_D) const | ResidueTorsions | |
hasVariable(const String &variable) const | ParameterSection | |
isValid() const | ParameterSection | [virtual] |
keys_ (defined in ParameterSection) | ParameterSection | [protected] |
MAX_FIELDS enum value (defined in ParameterSection) | ParameterSection | |
number_of_variables_ (defined in ParameterSection) | ParameterSection | [protected] |
operator=(const ParameterSection §ion) | ParameterSection | |
operator==(const ParameterSection ¶meter_section) const | ParameterSection | |
options | ParameterSection | |
ParameterSection() | ParameterSection | |
ParameterSection(const ParameterSection ¶meter_section) | ParameterSection | |
ResidueTorsions() | ResidueTorsions | |
section_entries_ (defined in ParameterSection) | ParameterSection | [protected] |
section_name_ (defined in ParameterSection) | ParameterSection | [protected] |
torsions_ (defined in ResidueTorsions) | ResidueTorsions | [protected] |
UNDEFINED | ParameterSection | [static] |
valid_ (defined in ParameterSection) | ParameterSection | [protected] |
variable_names_ (defined in ParameterSection) | ParameterSection | [protected] |
version_ (defined in ParameterSection) | ParameterSection | [protected] |
~ParameterSection() | ParameterSection | [virtual] |
~ResidueTorsions() | ResidueTorsions | [virtual] |