| algorithm_type_ | BALL::CharmmNonBonded | [private] |
| buildVectorOfNonBondedAtomPairs(const std::vector< std::pair< Atom *, Atom * > > &atom_vector) | BALL::CharmmNonBonded | [virtual] |
| CharmmNonBonded() | BALL::CharmmNonBonded | |
| CharmmNonBonded(ForceField &force_field) | BALL::CharmmNonBonded | |
| CharmmNonBonded(const CharmmNonBonded &charmm_non_bonded) | BALL::CharmmNonBonded | |
| clear() | BALL::CharmmNonBonded | [virtual] |
| cut_off_ | BALL::CharmmNonBonded | [private] |
| cut_off_electrostatic_ | BALL::CharmmNonBonded | [private] |
| cut_off_solvation_ | BALL::CharmmNonBonded | [private] |
| cut_off_vdw_ | BALL::CharmmNonBonded | [private] |
| cut_on_electrostatic_ | BALL::CharmmNonBonded | [private] |
| cut_on_solvation_ | BALL::CharmmNonBonded | [private] |
| cut_on_vdw_ | BALL::CharmmNonBonded | [private] |
| determineMethodOfAtomPairGeneration() | BALL::CharmmNonBonded | [virtual] |
| electrostatic_energy_ | BALL::CharmmNonBonded | [protected] |
| energy_ | BALL::ForceFieldComponent | [protected] |
| force_field_ | BALL::ForceFieldComponent | [protected] |
| ForceFieldComponent() | BALL::ForceFieldComponent | |
| ForceFieldComponent(ForceField &force_field) | BALL::ForceFieldComponent | |
| ForceFieldComponent(const ForceFieldComponent &force_field_component) | BALL::ForceFieldComponent | |
| getElectrostaticEnergy() const | BALL::CharmmNonBonded | [virtual] |
| getEnergy() const | BALL::ForceFieldComponent | [virtual] |
| getForceField() const | BALL::ForceFieldComponent | |
| getName() const | BALL::ForceFieldComponent | |
| getSolvationEnergy() const | BALL::CharmmNonBonded | [virtual] |
| getVdwEnergy() const | BALL::CharmmNonBonded | [virtual] |
| inverse_difference_off_on_electrostatic_3_ | BALL::CharmmNonBonded | [private] |
| inverse_difference_off_on_solvation_3_ | BALL::CharmmNonBonded | [private] |
| inverse_difference_off_on_vdw_3_ | BALL::CharmmNonBonded | [private] |
| is_torsion_ | BALL::CharmmNonBonded | [private] |
| isEnabled() const | BALL::ForceFieldComponent | [inline] |
| non_bonded_ | BALL::CharmmNonBonded | [private] |
| number_of_1_4_ | BALL::CharmmNonBonded | [private] |
| operator=(const CharmmNonBonded &charmm_non_bonded) | BALL::CharmmNonBonded | |
| operator==(const CharmmNonBonded &charmm_non_bonded) | BALL::CharmmNonBonded | |
| scaling_electrostatic_1_4_ | BALL::CharmmNonBonded | [private] |
| scaling_vdw_1_4_ | BALL::CharmmNonBonded | [private] |
| setEnabled(bool state) | BALL::ForceFieldComponent | [inline] |
| setForceField(ForceField &force_field) | BALL::ForceFieldComponent | |
| setName(const String &name) | BALL::ForceFieldComponent | |
| setup() | BALL::CharmmNonBonded | [virtual] |
| solvation_ | BALL::CharmmNonBonded | [private] |
| solvation_energy_ | BALL::CharmmNonBonded | [protected] |
| solvation_parameters_ | BALL::CharmmNonBonded | [private] |
| update() | BALL::ForceFieldComponent | [virtual] |
| updateEnergy() | BALL::CharmmNonBonded | [virtual] |
| updateForces() | BALL::CharmmNonBonded | [virtual] |
| use_dist_depend_dielectric_ | BALL::CharmmNonBonded | [private] |
| use_solvation_component_ | BALL::CharmmNonBonded | [private] |
| van_der_waals_parameters_ | BALL::CharmmNonBonded | [private] |
| van_der_waals_parameters_14_ | BALL::CharmmNonBonded | [private] |
| vdw_energy_ | BALL::CharmmNonBonded | [protected] |
| ~CharmmNonBonded() | BALL::CharmmNonBonded | [virtual] |
| ~ForceFieldComponent() | BALL::ForceFieldComponent | [virtual] |