, including all inherited members.
abort_by_energy_enabled_ | BALL::EnergyMinimizer | [protected] |
abort_energy_ | BALL::EnergyMinimizer | [protected] |
aborted_ | BALL::EnergyMinimizer | [protected] |
curr_num_of_vect_pairs_ | BALL::StrangLBFGSMinimizer | [protected] |
current_energy_ | BALL::EnergyMinimizer | [protected] |
current_grad_ | BALL::EnergyMinimizer | [protected] |
cutlo_ | BALL::EnergyMinimizer | [protected] |
direction_ | BALL::EnergyMinimizer | [protected] |
enableEnergyAbortCondition(bool state) | BALL::EnergyMinimizer | |
energy_difference_bound_ | BALL::EnergyMinimizer | [protected] |
energy_output_frequency_ | BALL::EnergyMinimizer | [protected] |
energy_update_counter_ | BALL::EnergyMinimizer | [protected] |
energyAbortConditionEnabled() const | BALL::EnergyMinimizer | |
EnergyMinimizer() | BALL::EnergyMinimizer | |
EnergyMinimizer(ForceField &force_field) | BALL::EnergyMinimizer | |
EnergyMinimizer(ForceField &force_field, const Options &options) | BALL::EnergyMinimizer | |
EnergyMinimizer(const EnergyMinimizer &energy_minimizer) | BALL::EnergyMinimizer | |
findStep() | BALL::StrangLBFGSMinimizer | [virtual] |
finishIteration() | BALL::EnergyMinimizer | [virtual] |
first_iter_ | BALL::StrangLBFGSMinimizer | [protected] |
force_field_ | BALL::EnergyMinimizer | [protected] |
force_update_counter_ | BALL::EnergyMinimizer | [protected] |
getDirection() | BALL::EnergyMinimizer | |
getEnergy() const | BALL::EnergyMinimizer | |
getEnergy() | BALL::EnergyMinimizer | |
getEnergyDifferenceBound() const | BALL::EnergyMinimizer | |
getEnergyOutputFrequency() const | BALL::EnergyMinimizer | |
getEnergyToAbort() const | BALL::EnergyMinimizer | |
getEnergyUpdateCounter() const | BALL::EnergyMinimizer | |
getForceField() | BALL::EnergyMinimizer | |
getForceUpdateCounter() const | BALL::EnergyMinimizer | |
getGradient() | BALL::EnergyMinimizer | |
getImprovedFlag() const | BALL::StrangLBFGSMinimizer | |
getInitialEnergy() const | BALL::EnergyMinimizer | |
getInitialEnergy() | BALL::EnergyMinimizer | |
getInitialGradient() | BALL::EnergyMinimizer | |
getMaxGradient() const | BALL::EnergyMinimizer | |
getMaximumDisplacement() const | BALL::EnergyMinimizer | |
getMaxNumberOfIterations() const | BALL::EnergyMinimizer | |
getMaxNumOfStoredVectPairs() const | BALL::StrangLBFGSMinimizer | |
getMaxSameEnergy() const | BALL::EnergyMinimizer | |
getNumberOfIterations() const | BALL::EnergyMinimizer | |
getSnapShotFrequency() const | BALL::EnergyMinimizer | |
improved_ | BALL::StrangLBFGSMinimizer | [protected] |
index_of_free_vect_ | BALL::StrangLBFGSMinimizer | [protected] |
initial_atoms_ | BALL::StrangLBFGSMinimizer | [protected] |
initial_energy_ | BALL::EnergyMinimizer | [protected] |
initial_grad_ | BALL::EnergyMinimizer | [protected] |
isConverged() const | BALL::EnergyMinimizer | [virtual] |
isValid() const | BALL::EnergyMinimizer | |
line_search_ | BALL::StrangLBFGSMinimizer | [protected] |
max_gradient_ | BALL::EnergyMinimizer | [protected] |
max_num_of_vect_pairs_ | BALL::StrangLBFGSMinimizer | [protected] |
max_same_energy_ | BALL::EnergyMinimizer | [protected] |
maximal_number_of_iterations_ | BALL::EnergyMinimizer | [protected] |
maximum_displacement_ | BALL::EnergyMinimizer | [protected] |
minimize(Size iterations=0, bool resume=false) | BALL::StrangLBFGSMinimizer | [virtual] |
number_of_atoms_ | BALL::StrangLBFGSMinimizer | [protected] |
number_of_iterations_ | BALL::EnergyMinimizer | [protected] |
old_energy_ | BALL::EnergyMinimizer | [protected] |
old_grad_ | BALL::EnergyMinimizer | [protected] |
operator=(const StrangLBFGSMinimizer &rhs) | BALL::StrangLBFGSMinimizer | |
BALL::EnergyMinimizer::operator=(const EnergyMinimizer &energy_minimizer) | BALL::EnergyMinimizer | |
operator==(const EnergyMinimizer &energy_minimizer) | BALL::EnergyMinimizer | |
options | BALL::EnergyMinimizer | |
printEnergy() const | BALL::EnergyMinimizer | [virtual] |
rho_ | BALL::StrangLBFGSMinimizer | [protected] |
same_energy_counter_ | BALL::EnergyMinimizer | [protected] |
setEnergyDifferenceBound(float energy_difference_bound) | BALL::EnergyMinimizer | |
setEnergyOutputFrequency(Size energy_output_frequency) | BALL::EnergyMinimizer | |
setEnergyToAbort(float value) | BALL::EnergyMinimizer | |
setImprovedFlag(bool flag) | BALL::StrangLBFGSMinimizer | |
setMaxGradient(float max_gradient) | BALL::EnergyMinimizer | |
setMaximumDisplacement(float maximum_displacement) | BALL::EnergyMinimizer | |
setMaxNumberOfIterations(Size number_of_iterations) | BALL::EnergyMinimizer | |
setMaxNumOfStoredVectPairs(Size num) | BALL::StrangLBFGSMinimizer | |
setMaxSameEnergy(Size number) | BALL::EnergyMinimizer | |
setNumberOfIterations(Size number_of_iterations) | BALL::EnergyMinimizer | |
setSnapShotFrequency(Size snapshot_frequency) | BALL::EnergyMinimizer | |
setup(ForceField &force_field) | BALL::EnergyMinimizer | |
setup(ForceField &force_field, SnapShotManager *ssm) | BALL::EnergyMinimizer | |
setup(ForceField &force_field, SnapShotManager *ssm, const Options &options) | BALL::EnergyMinimizer | |
setup(ForceField &force_field, const Options &options) | BALL::EnergyMinimizer | |
snapshot_ | BALL::EnergyMinimizer | [protected] |
snapshot_frequency_ | BALL::EnergyMinimizer | [protected] |
specificSetup() | BALL::StrangLBFGSMinimizer | [virtual] |
step_ | BALL::EnergyMinimizer | [protected] |
stored_s_ | BALL::StrangLBFGSMinimizer | [protected] |
stored_y_ | BALL::StrangLBFGSMinimizer | [protected] |
storeGradientEnergy() | BALL::EnergyMinimizer | |
StrangLBFGSMinimizer() | BALL::StrangLBFGSMinimizer | |
StrangLBFGSMinimizer(ForceField &force_field) | BALL::StrangLBFGSMinimizer | |
StrangLBFGSMinimizer(ForceField &force_field, SnapShotManager *ssm) | BALL::StrangLBFGSMinimizer | |
StrangLBFGSMinimizer(ForceField &force_field, SnapShotManager *ssm, const Options &options) | BALL::StrangLBFGSMinimizer | |
StrangLBFGSMinimizer(ForceField &force_field, const Options &options) | BALL::StrangLBFGSMinimizer | |
StrangLBFGSMinimizer(const StrangLBFGSMinimizer &rhs) | BALL::StrangLBFGSMinimizer | |
takeSnapShot() const | BALL::EnergyMinimizer | [virtual] |
updateDirection() | BALL::StrangLBFGSMinimizer | [virtual] |
updateEnergy() | BALL::EnergyMinimizer | [virtual] |
updateForces() | BALL::EnergyMinimizer | [virtual] |
valid_ | BALL::EnergyMinimizer | [protected] |
wasAborted() const | BALL::EnergyMinimizer | |
work_val_ | BALL::StrangLBFGSMinimizer | [protected] |
~EnergyMinimizer() | BALL::EnergyMinimizer | [virtual] |
~StrangLBFGSMinimizer() | BALL::StrangLBFGSMinimizer | [virtual] |