| ac_ | BALL::GeneralizedBornModel | [private] |
| atoms_ | BALL::GeneralizedBornModel | [private] |
| born_radii_ | BALL::GeneralizedBornModel | [private] |
| calculateBornRadii_() | BALL::GeneralizedBornModel | [private] |
| calculateCreationEnergy_() const | BALL::GeneralizedBornModel | [private] |
| calculateEnergy() | BALL::GeneralizedBornModel | |
| calculatePotential(HashMap< const Atom *, float > &p_hash) const | BALL::GeneralizedBornModel | |
| calculatePotential(const Atom &atom_i) const | BALL::GeneralizedBornModel | |
| calculateSolvationEnergy() | BALL::GeneralizedBornModel | |
| calculateTransferEnergy_() const | BALL::GeneralizedBornModel | [private] |
| clear() | BALL::GeneralizedBornModel | |
| coulombIntegralApproximation_(float distance, float scaled_radius_j, float radius_i) const | BALL::GeneralizedBornModel | [private] |
| dc_solute_ | BALL::GeneralizedBornModel | [private] |
| dc_solvent_ | BALL::GeneralizedBornModel | [private] |
| delta_ | BALL::GeneralizedBornModel | [private] |
| f_GB_(Size i, Size j) const | BALL::GeneralizedBornModel | [private] |
| GeneralizedBornModel() | BALL::GeneralizedBornModel | |
| getScalingFactors() const | BALL::GeneralizedBornModel | |
| kappa_ | BALL::GeneralizedBornModel | [private] |
| lambda_ | BALL::GeneralizedBornModel | [private] |
| pair_charges_ | BALL::GeneralizedBornModel | [private] |
| pair_distances_ | BALL::GeneralizedBornModel | [private] |
| pair_list_ | BALL::GeneralizedBornModel | [private] |
| readScalingFactors(const String &inifile_name) | BALL::GeneralizedBornModel | |
| rho_0_ | BALL::GeneralizedBornModel | [private] |
| scaling_factor_ | BALL::GeneralizedBornModel | [private] |
| scaling_factor_filename_ | BALL::GeneralizedBornModel | [private] |
| scaling_factors_ | BALL::GeneralizedBornModel | [private] |
| setScalingFactorFile(const String &filename) | BALL::GeneralizedBornModel | |
| setScalingFactors(const StringHashMap< float > &scaling_factors) | BALL::GeneralizedBornModel | |
| setSoluteDC(float solute_dc) | BALL::GeneralizedBornModel | |
| setSolventDC(float solvent_dc) | BALL::GeneralizedBornModel | |
| setup(const AtomContainer &ac) | BALL::GeneralizedBornModel | |
| squared_distances_ | BALL::GeneralizedBornModel | [private] |
| to_kJ_mol_ | BALL::GeneralizedBornModel | [private] |
| ~GeneralizedBornModel() | BALL::GeneralizedBornModel | |