, including all inherited members.
| ALGORITHM__DATABASE enum value | BALL::RotationalEntropyLoss | |
| ALGORITHM__GUESS enum value | BALL::RotationalEntropyLoss | |
| algorithm_type_ | BALL::RotationalEntropyLoss | [private] |
| AlgorithmType enum name | BALL::RotationalEntropyLoss | |
| bind_distance_offset_ | BALL::RotationalEntropyLoss | [private] |
| calculateScore() | BALL::RotationalEntropyLoss | [virtual] |
| CALCULATION__BOEHM enum value | BALL::RotationalEntropyLoss | |
| CALCULATION__FROZEN_GLYCOSIDIC_BONDS enum value | BALL::RotationalEntropyLoss | |
| CALCULATION__GLYCOSIDIC_BONDS enum value | BALL::RotationalEntropyLoss | |
| CALCULATION__GLYCOSIDIC_CONTRIBUTION enum value | BALL::RotationalEntropyLoss | |
| CALCULATION__ORIGINAL enum value | BALL::RotationalEntropyLoss | |
| calculation_method_ | BALL::RotationalEntropyLoss | [private] |
| CalculationMethod enum name | BALL::RotationalEntropyLoss | |
| clear() | BALL::RotationalEntropyLoss | [virtual] |
| cycleDFS_(const Atom *atom, HashSet< const Atom * > &visited, HashSet< const Bond * > &tree, std::stack< const Bond * > &possible_cycle_bonds, HashSet< const Bond * > &cycle_bonds, int &cycle_count) | BALL::RotationalEntropyLoss | [private] |
| fresno_types_ | BALL::RotationalEntropyLoss | [private] |
| frozenBondsDFS_(const Atom *atom, HashSet< const Atom * > &visited) | BALL::RotationalEntropyLoss | [private] |
| getName() const | BALL::ScoringComponent | |
| getScore() const | BALL::ScoringComponent | [virtual] |
| getScoringFunction() const | BALL::ScoringComponent | |
| glycosidic_bonds_ | BALL::RotationalEntropyLoss | [private] |
| grid_ | BALL::RotationalEntropyLoss | [private] |
| grid_spacing_ | BALL::RotationalEntropyLoss | [private] |
| heavy_atom_fractions_ | BALL::RotationalEntropyLoss | [private] |
| heavyAtomsDFS_(const Atom *atom, const Bond *bond, HashSet< const Atom * > &visited, int &heavy_atom_count, int &nonlip_heavy_atom_count) | BALL::RotationalEntropyLoss | [private] |
| is_frozen_ | BALL::RotationalEntropyLoss | [private] |
| ligand_ | BALL::RotationalEntropyLoss | [private] |
| N_rot_ | BALL::RotationalEntropyLoss | [private] |
| operator=(const RotationalEntropyLoss &fr) | BALL::RotationalEntropyLoss | |
| operator==(const RotationalEntropyLoss &fr) const | BALL::RotationalEntropyLoss | |
| receptor_ | BALL::RotationalEntropyLoss | [private] |
| rotatable_bonds_ | BALL::RotationalEntropyLoss | [private] |
| RotationalEntropyLoss() | BALL::RotationalEntropyLoss | |
| RotationalEntropyLoss(ScoringFunction &sf) | BALL::RotationalEntropyLoss | |
| RotationalEntropyLoss(const RotationalEntropyLoss &fr) | BALL::RotationalEntropyLoss | |
| score_ | BALL::ScoringComponent | [protected] |
| scoring_function_ | BALL::ScoringComponent | [protected] |
| ScoringComponent() | BALL::ScoringComponent | |
| ScoringComponent(const ScoringComponent &sc) | BALL::ScoringComponent | |
| ScoringComponent(ScoringFunction &sf) | BALL::ScoringComponent | |
| setName(const String &name) | BALL::ScoringComponent | |
| setScoringFunction(ScoringFunction &sf) | BALL::ScoringComponent | |
| setup() | BALL::RotationalEntropyLoss | [virtual] |
| updateFrozenBonds_() | BALL::RotationalEntropyLoss | [private] |
| ~RotationalEntropyLoss() | BALL::RotationalEntropyLoss | [virtual] |
| ~ScoringComponent() | BALL::ScoringComponent | [virtual] |