, including all inherited members.
| addMonomericPolymer(MonomericPolymer mp) | BALL::NMRStarFile | |
| assignShifts(BALLToBMRBMapper &ball_to_bmrb_mapping) | BALL::NMRStarFile | |
| assignShifts(AtomContainer &ac, const String &chemical_unit, const String &aligned_ball_sequence, const String &aligned_nmrstar_sequence) | BALL::NMRStarFile | |
| assignShifts_(BALLToBMRBMapper &pdb_to_bmrb_mapping) | BALL::NMRStarFile | [private] |
| atom_data_sets_ | BALL::NMRStarFile | [private] |
| CIFFile() | BALL::CIFFile | |
| CIFFile(const String &filename, File::OpenMode open_mode=std::ios::in) | BALL::CIFFile | |
| clear() | BALL::NMRStarFile | [virtual] |
| clearParameters() | BALL::CIFFile | |
| close() | BALL::File | |
| copy(String source_name, String destination_name, Size buffer_size=4096) | BALL::File | [static] |
| copyTo(const String &destination_name, Size buffer_size=4096) | BALL::File | |
| created_temp_filenames_ | BALL::File | [protected, static] |
| createTemporaryFilename(String &temporary, const String &suffix=".TMP") | BALL::File | [static] |
| current_datablock_ | BALL::CIFFile | [protected] |
| current_item_ | BALL::CIFFile | [protected] |
| current_saveframe_ | BALL::CIFFile | [protected] |
| datablocks_ | BALL::CIFFile | [protected] |
| datablocks_hash_ | BALL::CIFFile | [protected] |
| disableTransformation(Transformation transformation) | BALL::File | [static] |
| dummy_monomeric_polymer_ | BALL::NMRStarFile | [private] |
| dummy_NMR_spectrometer_ | BALL::NMRStarFile | [private] |
| dummy_sample_ | BALL::NMRStarFile | [private] |
| dummy_sample_condition_ | BALL::NMRStarFile | [private] |
| dummy_saveframe_ | BALL::NMRStarFile | [private] |
| dummy_shift_reference_set_ | BALL::NMRStarFile | [private] |
| enableTransformation(Transformation transformation) | BALL::File | [static] |
| entry_information_ | BALL::NMRStarFile | [private] |
| File() | BALL::File | |
| File(const String &name, OpenMode open_mode=std::ios::in) | BALL::File | |
| findDependiencies_() | BALL::NMRStarFile | [private] |
| FLOAT_VALUE_NA | BALL::NMRStarFile | [static] |
| getChemicalUnitByLabel(String const &label) const | BALL::NMRStarFile | |
| getChemicalUnitByLabel(String const &label) | BALL::NMRStarFile | |
| getDatablock(const String &name) const | BALL::CIFFile | |
| getDatablock(const String &name) | BALL::CIFFile | |
| getEntryInformation() const | BALL::NMRStarFile | [inline] |
| getFileStream() | BALL::File | |
| getMolecularInformation() const | BALL::NMRStarFile | [inline] |
| getMolecularInformation() | BALL::NMRStarFile | [inline] |
| getMonomericPolymer(Position i) | BALL::NMRStarFile | |
| getMonomericPolymer(Position i) const | BALL::NMRStarFile | |
| getMonomericPolymer(const String &name) | BALL::NMRStarFile | |
| getMonomericPolymer(const String &name) const | BALL::NMRStarFile | |
| getMonomericPolymers() const | BALL::NMRStarFile | [inline] |
| getName() const | BALL::File | |
| getNMRData() const | BALL::NMRStarFile | |
| getNMRSpectrometer(Position i) | BALL::NMRStarFile | |
| getNMRSpectrometer(Position i) const | BALL::NMRStarFile | |
| getNMRSpectrometerByName(String name) | BALL::NMRStarFile | |
| getNMRSpectrometerByName(String name) const | BALL::NMRStarFile | |
| getNMRSpectrometerFieldStrength(Position i) const | BALL::NMRStarFile | |
| getNMRSpectrometerManufacturer(Position i) const | BALL::NMRStarFile | |
| getNMRSpectrometers() | BALL::NMRStarFile | [inline] |
| getNMRSpectrometers() const | BALL::NMRStarFile | [inline] |
| getNumberOfAtoms() const | BALL::NMRStarFile | |
| getNumberOfMonomericPolymers() const | BALL::NMRStarFile | [inline] |
| getNumberOfNMRSpectrometers() const | BALL::NMRStarFile | [inline] |
| getNumberOfSampleConditions() const | BALL::NMRStarFile | [inline] |
| getNumberOfSamples() const | BALL::NMRStarFile | [inline] |
| getNumberOfShiftReferenceSets() const | BALL::NMRStarFile | [inline] |
| getNumberOfShiftsAssigned() const | BALL::NMRStarFile | [inline] |
| getOpenMode() const | BALL::File | |
| getOriginalName() const | BALL::File | |
| getResidueSequence(Position i=0) const | BALL::NMRStarFile | |
| getSample(Position i) const | BALL::NMRStarFile | |
| getSample(String label) const | BALL::NMRStarFile | |
| getSampleCondition(Position i) | BALL::NMRStarFile | [inline] |
| getSampleCondition(Position i) const | BALL::NMRStarFile | [inline] |
| getSampleConditionByName(String name) | BALL::NMRStarFile | |
| getSampleConditionByName(String name) const | BALL::NMRStarFile | |
| getSampleConditions() const | BALL::NMRStarFile | [inline] |
| getSampleConditions() | BALL::NMRStarFile | [inline] |
| getSamples() const | BALL::NMRStarFile | [inline] |
| getShiftReferenceSet(Position i) | BALL::NMRStarFile | [inline] |
| getShiftReferenceSet(Position i) const | BALL::NMRStarFile | [inline] |
| getShiftReferenceSetByName(String name) const | BALL::NMRStarFile | |
| getShiftReferenceSetByName(String name) | BALL::NMRStarFile | |
| getShiftReferenceSets() | BALL::NMRStarFile | [inline] |
| getShiftReferenceSets() const | BALL::NMRStarFile | [inline] |
| getSize() | BALL::File | |
| getSize(String name) | BALL::File | [static] |
| getTransformationManager() | BALL::File | |
| getTransformationManager() const | BALL::File | |
| getType(String name, bool trace_link) | BALL::File | [static] |
| getType(bool trace_link) const | BALL::File | |
| has_C_shifts_ | BALL::NMRStarFile | [private] |
| has_H_shifts_ | BALL::NMRStarFile | [private] |
| has_N_shifts_ | BALL::NMRStarFile | [private] |
| hasCshifts() const | BALL::NMRStarFile | [inline] |
| hasDatablock(const String &name) const | BALL::CIFFile | |
| hasHshifts() const | BALL::NMRStarFile | [inline] |
| hasMonomericPolymer(String name) const | BALL::NMRStarFile | |
| hasNshifts() const | BALL::NMRStarFile | [inline] |
| hasSample(String label) const | BALL::NMRStarFile | |
| hasSampleCondition(String name) | BALL::NMRStarFile | |
| hasSampleCondition(String name) const | BALL::NMRStarFile | |
| hasShiftReferenceSet(String name) | BALL::NMRStarFile | |
| inDatablock(const char *name) | BALL::CIFFile | |
| inItem(const char *name) | BALL::CIFFile | |
| initRead_() | BALL::CIFFile | [protected, virtual] |
| inSafeframe(const char *name) | BALL::CIFFile | |
| insertDatablock(const Datablock &datablock) | BALL::CIFFile | |
| INT_VALUE_NA | BALL::NMRStarFile | [static] |
| is_open_ | BALL::File | [protected] |
| is_temporary_ | BALL::File | [protected] |
| isAccessible(String name) | BALL::File | [static] |
| isAccessible() const | BALL::File | |
| isCanonized() const | BALL::File | |
| isClosed() const | BALL::File | |
| isExecutable(String name) | BALL::File | [static] |
| isExecutable() const | BALL::File | |
| isMonomericPolymer(String chemical_unit_label) | BALL::NMRStarFile | |
| isOpen() const | BALL::File | |
| isReadable(String name) | BALL::File | [static] |
| isReadable() const | BALL::File | |
| isTransformationEnabled(Transformation transformation) | BALL::File | [static] |
| isValid() const | BALL::File | |
| isValidSingleValue_(String value) | BALL::NMRStarFile | [private] |
| isWritable(String name) | BALL::File | [static] |
| isWritable() const | BALL::File | |
| MODE_APP | BALL::File | [static] |
| MODE_ATE | BALL::File | [static] |
| MODE_BINARY | BALL::File | [static] |
| MODE_IN | BALL::File | [static] |
| MODE_OUT | BALL::File | [static] |
| MODE_TRUNC | BALL::File | [static] |
| molecular_system_ | BALL::NMRStarFile | [private] |
| molecule_ | BALL::CIFFile | [protected] |
| monomeric_polymers_ | BALL::NMRStarFile | [private] |
| move(const String &source_name, const String &destination_name) | BALL::File | [static] |
| moveTo(const String &destination_name) | BALL::File | |
| name_ | BALL::File | [protected] |
| nmr_spectrometers_ | BALL::NMRStarFile | [private] |
| NMRStarFile() | BALL::NMRStarFile | |
| NMRStarFile(const String &file_name, File::OpenMode open_mode=std::ios::in) | BALL::NMRStarFile | |
| number_of_assigned_shifts_ | BALL::NMRStarFile | [private] |
| number_of_shift_sets_ | BALL::NMRStarFile | [private] |
| open(const String &name, File::OpenMode open_mode=std::ios::in) | BALL::File | |
| open_mode_ | BALL::File | [protected] |
| OpenMode typedef | BALL::File | |
| operator!=(const NMRStarFile &f) | BALL::NMRStarFile | |
| BALL::CIFFile::operator!=(const File &file) const | BALL::File | |
| operator==(const NMRStarFile &f) | BALL::NMRStarFile | |
| BALL::CIFFile::operator==(const File &file) const | BALL::File | |
| original_name_ | BALL::File | [protected] |
| POSITION_VALUE_NA | BALL::NMRStarFile | [static] |
| read() | BALL::NMRStarFile | [virtual] |
| read(AtomContainer &ac) | BALL::NMRStarFile | |
| readEntryInformation_() | BALL::NMRStarFile | [private] |
| readMolSystem_() | BALL::NMRStarFile | [private] |
| readMonomericPolymers_() | BALL::NMRStarFile | [private] |
| readNMRSpectrometer_() | BALL::NMRStarFile | [private] |
| readSampleConditions_() | BALL::NMRStarFile | [private] |
| readSamples_() | BALL::NMRStarFile | [private] |
| readShiftReferences_() | BALL::NMRStarFile | [private] |
| readShifts_() | BALL::NMRStarFile | [private] |
| registerTransformation(const String &pattern, const String &exec) | BALL::File | [static] |
| remove(String name) | BALL::File | [static] |
| remove() | BALL::File | |
| rename(String old_path, String new_path) | BALL::File | [static] |
| renameTo(const String &new_path) | BALL::File | |
| reopen() | BALL::File | |
| reopen(File::OpenMode open_mode) | BALL::File | |
| sample_conditions_ | BALL::NMRStarFile | [private] |
| samples_ | BALL::NMRStarFile | [private] |
| setMolecule(Molecule *molecule) | BALL::CIFFile | |
| setName(const String &name) | BALL::File | |
| setSpecialCharacters_(String characters) | BALL::NMRStarFile | [private] |
| shift_references_ | BALL::NMRStarFile | [private] |
| special_characters_ | BALL::NMRStarFile | [private] |
| state | BALL::CIFFile | [static] |
| Transformation enum name | BALL::File | |
| TRANSFORMATION__EXEC enum value | BALL::File | |
| TRANSFORMATION__FILTER enum value | BALL::File | |
| TRANSFORMATION__URL enum value | BALL::File | |
| TRANSFORMATION_EXEC_PREFIX | BALL::File | [static] |
| TRANSFORMATION_FILE_PREFIX | BALL::File | [static] |
| TRANSFORMATION_FTP_PREFIX | BALL::File | [static] |
| TRANSFORMATION_HTTP_PREFIX | BALL::File | [static] |
| transformation_manager_ | BALL::File | [protected, static] |
| transformation_methods_ | BALL::File | [protected, static] |
| truncate(String path, Size size=0) | BALL::File | [static] |
| truncate(Size size=0) | BALL::File | |
| Type enum name | BALL::File | |
| TYPE__BLOCK_SPECIAL_FILE enum value | BALL::File | |
| TYPE__CHAR_SPECIAL_FILE enum value | BALL::File | |
| TYPE__DIRECTORY enum value | BALL::File | |
| TYPE__FIFO_SPECIAL_FILE enum value | BALL::File | |
| TYPE__REGULAR_FILE enum value | BALL::File | |
| TYPE__SOCKET enum value | BALL::File | |
| TYPE__SYMBOLIC_LINK enum value | BALL::File | |
| TYPE__UNKNOWN enum value | BALL::File | |
| unregisterTransformation(const String &pattern) | BALL::File | [static] |
| valid_ | BALL::NMRStarFile | [private] |
| valueToFloat_(String value) | BALL::NMRStarFile | [private] |
| valueToInt_(String value) | BALL::NMRStarFile | [private] |
| write() | BALL::CIFFile | [virtual] |
| ~CIFFile() | BALL::CIFFile | [virtual] |
| ~File() | BALL::File | [virtual] |
| ~NMRStarFile() | BALL::NMRStarFile | |
1.6.3
