abop | BALL::PartialBondOrderAssignment | |
bond_orders | BALL::PartialBondOrderAssignment | |
clear() | BALL::PartialBondOrderAssignment | |
coarsePenalty(float atom_type_penalty, float bond_length_penalty) const | BALL::PartialBondOrderAssignment | |
coarsePenalty() const | BALL::PartialBondOrderAssignment | |
convertToFullAssignment() | BALL::PartialBondOrderAssignment | |
estimateAtomTypePenalty_(Atom *atom, Index atom_index, int fixed_valence, int fixed_virtual_order, int num_free_bonds, HEURISTIC_INDEX heuristic_index) | BALL::PartialBondOrderAssignment | |
estimateBondLengthPenalty_(Index atom_index, const vector< Bond * > &free_bonds, int fixed_virtual_order, int fixed_valence, int num_free_bonds) | BALL::PartialBondOrderAssignment | |
estimated_atom_type_penalty | BALL::PartialBondOrderAssignment | |
estimated_bond_length_penalty | BALL::PartialBondOrderAssignment | |
estimatePenalty_(bool include_heuristic_term=true, HEURISTIC_INDEX heuristic_index=SIMPLE) | BALL::PartialBondOrderAssignment | |
finePenalty() const | BALL::PartialBondOrderAssignment | inline |
getAtomTypePenalty(bool include_heuristic_term=true, HEURISTIC_INDEX heuristic_index=SIMPLE) | BALL::PartialBondOrderAssignment | |
HEURISTIC_INDEX enum name | BALL::PartialBondOrderAssignment | |
last_bond | BALL::PartialBondOrderAssignment | |
MEDIUM enum value | BALL::PartialBondOrderAssignment | |
operator<(const PartialBondOrderAssignment &b) const | BALL::PartialBondOrderAssignment | |
PartialBondOrderAssignment(AssignBondOrderProcessor *parent) | BALL::PartialBondOrderAssignment | |
SIMPLE enum value | BALL::PartialBondOrderAssignment | |
TIGHT enum value | BALL::PartialBondOrderAssignment | |
~PartialBondOrderAssignment() | BALL::PartialBondOrderAssignment | |