BALL::SDGenerator Member List

This is the complete list of members for BALL::SDGenerator, including all inherited members.

ASSEMBLED enum value	BALL::SDGenerator
assembleSD_()	BALL::SDGenerator	protected
attachBridged_(Position current_ring, std::vector< RingAnalyser::Ring > &current_system)	BALL::SDGenerator	protected
attachCore_(Position current_ring, std::vector< RingAnalyser::Ring > &current_system, float x_start)	BALL::SDGenerator	protected
attachFused_(Position current_ring, std::vector< RingAnalyser::Ring > &current_system)	BALL::SDGenerator	protected
attachSpiro_(Position current_ring, std::vector< RingAnalyser::Ring > &current_system)	BALL::SDGenerator	protected
attachTemplate_(Position current_ring, std::vector< RingAnalyser::Ring > &current_system)	BALL::SDGenerator	protected
buildOpenPolygon_(RingAnalyser::Ring &ring, Position first_anchor_index, Position second_anchor_index)	BALL::SDGenerator	protected
buildRegularPolygon_(RingAnalyser::Ring &ring, Position first_anchor_index, bool clockwise)	BALL::SDGenerator	protected
chains_	BALL::SDGenerator	protected
checkOverlap_(Atom *atom)	BALL::SDGenerator	protected
clear()	BALL::SDGenerator
compareChains_(const vector< Atom * > &x, const vector< Atom * > &y)	BALL::SDGenerator	protectedstatic
computeAdjacencyMatrix_(std::vector< Atom * > &chain, std::vector< bool > &result)	BALL::SDGenerator	protected
computeAngularDemand_(Atom *seed)	BALL::SDGenerator	protected
computeAngularSeparation_(Atom *seed)	BALL::SDGenerator	protected
computeCFS_(Vector3 const &input)	BALL::SDGenerator	protected
computeCoreCFS_(RingAnalyser::Ring &ring, bool clockwise)	BALL::SDGenerator	protected
computeShelleyPriorities_()	BALL::SDGenerator	protected
constructRingSystem_(Position current_ring_system)	BALL::SDGenerator	protected
CORE_CHAIN enum value	BALL::SDGenerator
DEPOSITED enum value	BALL::SDGenerator
depositPFU_(Atom *seed_atom, Atom *next_neighbour)	BALL::SDGenerator	protected
EDGE enum value	BALL::SDGenerator
EQAS enum value	BALL::SDGenerator
findFloydWarshallPath_(std::vector< int > &path, std::vector< Index > &next, Size remaining_atoms, Position i, Position j, std::list< Index > &output)	BALL::SDGenerator	protected
FIRST_SDGENERATOR_PROPERTY enum value	BALL::SDGenerator
FXAS enum value	BALL::SDGenerator
generateSD(System &molecule_sys)	BALL::SDGenerator
getBackupCFS_(Atom const *, bool hi)	BALL::SDGenerator	protected
getCFS_(Atom const *atom, bool hi)	BALL::SDGenerator	protected
HEAD enum value	BALL::SDGenerator
IN_RING enum value	BALL::SDGenerator
INITIALIZED_HEAD_CFS enum value	BALL::SDGenerator
LAST_SDGENERATOR_PROPERTY enum value	BALL::SDGenerator
options	BALL::SDGenerator
placeSubstituent_(Atom *seed, Atom *head, Atom *next)	BALL::SDGenerator	protected
prepare_()	BALL::SDGenerator	protected
Property enum name	BALL::SDGenerator
pushCFS_(Atom *atom)	BALL::SDGenerator	protected
redraw_queue_	BALL::SDGenerator	protected
ring_analyser_	BALL::SDGenerator	protected
ringIsClockwise_(const RingAnalyser::Ring &ring, Index start_index=0) const	BALL::SDGenerator	protected
SDGenerator(bool show_hydrogens=false)	BALL::SDGenerator
sequenceSubstituents_(Atom *seed)	BALL::SDGenerator	protected
setCFS_(Atom *atom, Angle cfs, bool high)	BALL::SDGenerator	protected
setDefaultOptions()	BALL::SDGenerator
smoothCFSAngle_(Atom *seed)	BALL::SDGenerator	protected
system_	BALL::SDGenerator	protected
treatChains_()	BALL::SDGenerator	protected
ZAG enum value	BALL::SDGenerator
ZIG enum value	BALL::SDGenerator
~SDGenerator()	BALL::SDGenerator	virtual