| base_function_ | BALL::ScoringFunction | protected |
| calculateScore() | BALL::ScoringFunction | |
| clear() | BALL::SLICKEnergy | virtual |
| components_ | BALL::ScoringFunction | protected |
| getBaseFunction() const | BALL::ScoringFunction | |
| getCHPIScore() const | BALL::SLICKEnergy | |
| getCoefficient(const ScoringComponent *component, float &coefficient) const | BALL::ScoringFunction | |
| getCoefficient(const String &name, float &coefficient) const | BALL::ScoringFunction | |
| getComponent(const String &name) const | BALL::ScoringFunction | |
| getComponent(const Size index) const | BALL::ScoringFunction | |
| getFirstMolecule() const | BALL::ScoringFunction | |
| getHydrogenBondScore() const | BALL::SLICKEnergy | |
| getIntercept() const | BALL::ScoringFunction | |
| getLigand() const | BALL::ScoringFunction | |
| getMaximumNumberOfErrors() const | BALL::ScoringFunction | |
| getNonpolarSolvationScore() const | BALL::SLICKEnergy | |
| getPolarSolvationScore() const | BALL::SLICKEnergy | |
| getReceptor() const | BALL::ScoringFunction | |
| getSecondMolecule() const | BALL::ScoringFunction | |
| getUnassignedAtoms() const | BALL::ScoringFunction | |
| getUnassignedAtoms() | BALL::ScoringFunction | |
| getVDWScore() const | BALL::SLICKEnergy | |
| insertComponent(ScoringComponent *component, float coefficient=1.0f) | BALL::ScoringFunction | |
| intercept_ | BALL::ScoringFunction | protected |
| max_number_of_errors_ | BALL::ScoringFunction | protected |
| molecule1_ | BALL::ScoringFunction | protected |
| molecule2_ | BALL::ScoringFunction | protected |
| name_ | BALL::ScoringFunction | protected |
| number_of_errors_ | BALL::ScoringFunction | protected |
| operator=(const SLICKEnergy &slick) | BALL::SLICKEnergy | |
| BALL::ScoringFunction::operator=(const ScoringFunction &sf) | BALL::ScoringFunction | |
| options | BALL::ScoringFunction | |
| registerComponents_() | BALL::SLICKEnergy | private |
| removeComponent(const ScoringComponent *component) | BALL::ScoringFunction | |
| removeComponent(const String &name) | BALL::ScoringFunction | |
| score_ | BALL::ScoringFunction | protected |
| ScoringFunction() | BALL::ScoringFunction | |
| ScoringFunction(const ScoringFunction &sf) | BALL::ScoringFunction | |
| ScoringFunction(Molecule &receptor, Molecule &ligand) | BALL::ScoringFunction | |
| ScoringFunction(Molecule &receptor, Molecule &ligand, const Options &options) | BALL::ScoringFunction | |
| setBaseFunction(ScoringBaseFunction &base_function) | BALL::ScoringFunction | |
| setCoefficient(const ScoringComponent *component, float coefficient) | BALL::ScoringFunction | |
| setCoefficient(const String &name, float coefficient) | BALL::ScoringFunction | |
| setFirstMolecule(Molecule &molecule1) | BALL::ScoringFunction | |
| setIntercept(double intercept) | BALL::ScoringFunction | |
| setLigand(Molecule &ligand) | BALL::ScoringFunction | |
| setMaximumNumberOfErrors(Size nr) | BALL::ScoringFunction | |
| setReceptor(Molecule &receptor) | BALL::ScoringFunction | |
| setSecondMolecule(Molecule &molecule2) | BALL::ScoringFunction | |
| setup() | BALL::ScoringFunction | |
| setup(Molecule &receptor, Molecule &ligand) | BALL::ScoringFunction | |
| setup(Molecule &receptor, Molecule &ligand, const Options &options) | BALL::ScoringFunction | |
| SLICKEnergy() | BALL::SLICKEnergy | |
| SLICKEnergy(Molecule &protein, Molecule &ligand) | BALL::SLICKEnergy | |
| SLICKEnergy(Molecule &protein, Molecule &ligand, const Options &options) | BALL::SLICKEnergy | |
| SLICKEnergy(const SLICKEnergy &slick) | BALL::SLICKEnergy | |
| specificSetup() | BALL::SLICKEnergy | virtual |
| unassigned_atoms_ | BALL::ScoringFunction | protected |
| ~ScoringFunction() | BALL::ScoringFunction | virtual |
| ~SLICKEnergy() | BALL::SLICKEnergy | virtual |
1.8.3.1