| add_hydrogens_id_ | BALL::VIEW::MolecularStructure | private |
| addComposite_(Composite &composite, const String &name) | BALL::VIEW::MolecularStructure | privatevirtual |
| addHydrogens() | BALL::VIEW::MolecularStructure | slot |
| addToolBarEntries(QToolBar *main_tb) | BALL::VIEW::ModularWidget | virtual |
| amber_ | BALL::VIEW::MolecularStructure | private |
| amber_dialog_ | BALL::VIEW::MolecularStructure | private |
| AMBER_FF enum value | BALL::VIEW::MolecularStructure | |
| amber_ff_id_ | BALL::VIEW::MolecularStructure | private |
| applyForceFieldSettings_() | BALL::VIEW::MolecularStructure | private |
| applyPreferences() | BALL::VIEW::ModularWidget | inlinevirtual |
| assign_bond_orders_id_ | BALL::VIEW::MolecularStructure | private |
| assign_charges_id_ | BALL::VIEW::MolecularStructure | private |
| bond_order_dialog_ | BALL::VIEW::MolecularStructure | private |
| bond_order_results_dialog_ | BALL::VIEW::MolecularStructure | private |
| build_bonds_id_ | BALL::VIEW::MolecularStructure | private |
| build_endcaps_id_ | BALL::VIEW::MolecularStructure | private |
| build_peptide_id_ | BALL::VIEW::MolecularStructure | private |
| buildBonds() | BALL::VIEW::MolecularStructure | slot |
| buildEndcaps() | BALL::VIEW::MolecularStructure | slot |
| buildPeptide() | BALL::VIEW::MolecularStructure | slot |
| calculate_hbonds_id_ | BALL::VIEW::MolecularStructure | private |
| calculate_ramachandran_ | BALL::VIEW::MolecularStructure | private |
| calculate_RMSD_id_ | BALL::VIEW::MolecularStructure | private |
| calculate_ss_id_ | BALL::VIEW::MolecularStructure | private |
| calculateFDPB(bool show=true) | BALL::VIEW::MolecularStructure | slot |
| calculateForceFieldEnergy() | BALL::VIEW::MolecularStructure | slot |
| calculateHBonds() | BALL::VIEW::MolecularStructure | slot |
| calculateRamachandranPlot() | BALL::VIEW::MolecularStructure | slot |
| calculateRMSD() | BALL::VIEW::MolecularStructure | virtualslot |
| calculateSecondaryStructure() | BALL::VIEW::MolecularStructure | virtualslot |
| canHandle(const String &) const | BALL::VIEW::ModularWidget | inlinevirtual |
| center_camera_id_ | BALL::VIEW::MolecularStructure | private |
| centerCamera(Composite *composite=0) | BALL::VIEW::MolecularStructure | slot |
| charmm_ | BALL::VIEW::MolecularStructure | private |
| charmm_dialog_ | BALL::VIEW::MolecularStructure | private |
| CHARMM_FF enum value | BALL::VIEW::MolecularStructure | |
| charmm_ff_id_ | BALL::VIEW::MolecularStructure | private |
| check_structure_id_ | BALL::VIEW::MolecularStructure | private |
| checkMenu(MainControl &main_control) | BALL::VIEW::MolecularStructure | virtual |
| checkResidue() | BALL::VIEW::MolecularStructure | virtualslot |
| chooseAmberFF() | BALL::VIEW::MolecularStructure | slot |
| chooseCharmmFF() | BALL::VIEW::MolecularStructure | slot |
| chooseForceField(Position nr) | BALL::VIEW::MolecularStructure | slot |
| chooseMMFF94() | BALL::VIEW::MolecularStructure | slot |
| clear() | BALL::VIEW::ModularWidget | virtual |
| ConnectionObject() | BALL::VIEW::ConnectionObject | |
| countInstances_(const std::type_info &type) | BALL::Embeddable | protectedstatic |
| create_distance_grid_id2_ | BALL::VIEW::MolecularStructure | private |
| create_distance_grid_id_ | BALL::VIEW::MolecularStructure | private |
| createGridFromCameraDistance() | BALL::VIEW::MolecularStructure | virtualslot |
| createGridFromDistance() | BALL::VIEW::MolecularStructure | virtualslot |
| default_visible_ | BALL::VIEW::ModularWidget | protected |
| destroy() | BALL::VIEW::ModularWidget | inlinevirtual |
| dump(std::ostream &s=std::cout, Size depth=0) const | BALL::VIEW::ModularWidget | virtual |
| Embeddable(const String &identifier="<Embeddable>") | BALL::Embeddable | |
| Embeddable(const Embeddable &embeddable) | BALL::Embeddable | |
| EmbeddableVector typedef | BALL::Embeddable | |
| energy_id_ | BALL::VIEW::MolecularStructure | private |
| fdpb_dialog_ | BALL::VIEW::MolecularStructure | private |
| fetchPreferences(INIFile &inifile) | BALL::VIEW::MolecularStructure | virtual |
| finalizePreferencesTab(Preferences &preferences) | BALL::VIEW::ModularWidget | virtual |
| finalizeWidget(MainControl &main_control) | BALL::VIEW::ModularWidget | virtual |
| force_field_id_ | BALL::VIEW::MolecularStructure | private |
| getAmberConfigurationDialog() | BALL::VIEW::MolecularStructure | |
| getAmberFF() | BALL::VIEW::MolecularStructure | |
| getBondOrderDialog() | BALL::VIEW::MolecularStructure | inline |
| getBondOrderDialog() const | BALL::VIEW::MolecularStructure | inline |
| getBondOrderResultsDialog() | BALL::VIEW::MolecularStructure | inline |
| getBondOrderResultsDialog() const | BALL::VIEW::MolecularStructure | inline |
| getCharmmConfigurationDialog() | BALL::VIEW::MolecularStructure | |
| getCharmmFF() | BALL::VIEW::MolecularStructure | |
| getFDPBDialog() | BALL::VIEW::MolecularStructure | inline |
| getForceField() | BALL::VIEW::MolecularStructure | |
| getFragmentDB() const | BALL::VIEW::ModularWidget | |
| getIdentifier() const | BALL::Embeddable | |
| getInstance_(const std::type_info &type, Position index) | BALL::Embeddable | protectedstatic |
| getInstance_(const std::type_info &type, const String &identifier) | BALL::Embeddable | protectedstatic |
| getMainControl() const | BALL::VIEW::ModularWidget | |
| getMDSimulationDialog() | BALL::VIEW::MolecularStructure | inline |
| getMinimizationDialog() | BALL::VIEW::MolecularStructure | inline |
| getMMFF94() | BALL::VIEW::MolecularStructure | |
| getMMFF94ConfigurationDialog() | BALL::VIEW::MolecularStructure | |
| getParent() const | BALL::VIEW::ConnectionObject | |
| getRoot() | BALL::VIEW::ConnectionObject | |
| getWorkingDir() | BALL::VIEW::ModularWidget | |
| initializePreferencesTab(Preferences &preferences) | BALL::VIEW::ModularWidget | virtual |
| initializeWidget(MainControl &main_control) | BALL::VIEW::MolecularStructure | virtual |
| insertMenuEntry(Position parent_id, const String &name, const QObject *receiver=0, const char *slot=0, const String &description="", QKeySequence accel=QKeySequence()) | BALL::VIEW::ModularWidget | |
| isConnectionObjectRegistered(const ConnectionObject &object) | BALL::VIEW::ConnectionObject | |
| isValid() const | BALL::VIEW::ConnectionObject | virtual |
| last_action_ | BALL::VIEW::ModularWidget | protected |
| lockComposites() | BALL::VIEW::ModularWidget | |
| main_toolbar_actions_ | BALL::VIEW::ModularWidget | protected |
| map_proteins_id_ | BALL::VIEW::MolecularStructure | private |
| mapProteins() | BALL::VIEW::MolecularStructure | virtualslot |
| md_dialog_ | BALL::VIEW::MolecularStructure | private |
| MDSimulation(bool show_dialog_=true) | BALL::VIEW::MolecularStructure | slot |
| mdsimulation_id_ | BALL::VIEW::MolecularStructure | private |
| menu_FPDB_ | BALL::VIEW::MolecularStructure | private |
| minimization_dialog_ | BALL::VIEW::MolecularStructure | private |
| minimization_id_ | BALL::VIEW::MolecularStructure | private |
| mmff94_dialog_ | BALL::VIEW::MolecularStructure | private |
| MMFF94_FF enum value | BALL::VIEW::MolecularStructure | |
| mmff94_id_ | BALL::VIEW::MolecularStructure | private |
| mmff_ | BALL::VIEW::MolecularStructure | private |
| ModularWidget(const char *name="<ModularWidget>") | BALL::VIEW::ModularWidget | |
| ModularWidget(const ModularWidget &widget) | BALL::VIEW::ModularWidget | |
| MolecularStructure(QWidget *parent=0, const char *name=0) | BALL::VIEW::MolecularStructure | |
| MolecularStructure(const MolecularStructure &m) | BALL::VIEW::MolecularStructure | |
| notify_(Message *message) | BALL::VIEW::ConnectionObject | protected |
| notify_(Message &message) | BALL::VIEW::ConnectionObject | protected |
| onNotify(Message *message) | BALL::VIEW::MolecularStructure | virtual |
| onNotify_(Message *message) | BALL::VIEW::ConnectionObject | protected |
| openFile(const String &) | BALL::VIEW::ModularWidget | inlinevirtual |
| registerConnectionObject(ConnectionObject &object) | BALL::VIEW::ConnectionObject | |
| registerForHelpSystem(const QObject *object, const String &url) | BALL::VIEW::ModularWidget | virtual |
| registerInstance_(const std::type_info &type, const Embeddable *instance) | BALL::Embeddable | protectedstatic |
| registerThis() | BALL::Embeddable | virtual |
| registerWidget(ModularWidget *mwidget) | BALL::VIEW::ModularWidget | static |
| runBondOrderAssignment(bool show_dialog=true) | BALL::VIEW::MolecularStructure | slot |
| runMinimization(bool show_dialog_=true) | BALL::VIEW::MolecularStructure | slot |
| selectUnassignedForceFieldAtoms_() | BALL::VIEW::MolecularStructure | private |
| setIcon(const String &filename, bool add_to_main_toolbar=true) | BALL::VIEW::ModularWidget | |
| setIdentifier(const String &identifier) | BALL::Embeddable | |
| setMenuHelp(const String &url) | BALL::VIEW::ModularWidget | |
| setMenuHint(const String &hint) | BALL::VIEW::ModularWidget | |
| setStatusbarText(const String &text, bool important=false) | BALL::VIEW::ModularWidget | virtual |
| setStatusbarText(const QString &text, bool important=false) | BALL::VIEW::ModularWidget | virtual |
| setup_ff_ | BALL::VIEW::MolecularStructure | private |
| setupForceField() | BALL::VIEW::MolecularStructure | slot |
| setupForceField_(System *system, bool disable_selection=false) | BALL::VIEW::MolecularStructure | private |
| setWorkingDir(const String &dir) | BALL::VIEW::ModularWidget | |
| setWorkingDirFromFilename_(String filename) | BALL::VIEW::ModularWidget | |
| show_window_enty_ | BALL::VIEW::ModularWidget | protected |
| showAmberForceFieldOptions() | BALL::VIEW::MolecularStructure | slot |
| showBondOrderAssignmentResults(AssignBondOrderProcessor &bop) | BALL::VIEW::MolecularStructure | slot |
| showCharmmForceFieldOptions() | BALL::VIEW::MolecularStructure | slot |
| showHelp(const String &url) | BALL::VIEW::ModularWidget | virtual |
| showMMFF94ForceFieldOptions() | BALL::VIEW::MolecularStructure | slot |
| unlockComposites() | BALL::VIEW::ModularWidget | |
| unregisterConnectionObject(ConnectionObject &object) | BALL::VIEW::ConnectionObject | |
| unregisterInstance_(const Embeddable *instance) | BALL::Embeddable | protectedstatic |
| unregisterThis() | BALL::Embeddable | |
| window_menu_entry_ | BALL::VIEW::ModularWidget | protected |
| writePreferences(INIFile &inifile) | BALL::VIEW::MolecularStructure | virtual |
| ~ConnectionObject() | BALL::VIEW::ConnectionObject | virtual |
| ~Embeddable() | BALL::Embeddable | virtual |
| ~ModularWidget() | BALL::VIEW::ModularWidget | virtual |
| ~MolecularStructure() | BALL::VIEW::MolecularStructure | virtual |
1.8.3.1