| atom_pairwise_ | BALL::ScoringComponent | protected |
| base_function_ | BALL::ScoringComponent | protected |
| calculateBendEmpiricalForceConstant(Atom &atom1, Atom &atom2, Atom &atom3, double angle_0) const | BALL::MMFF94StretchBend | |
| calculateBendEmpiricalReferenceAngle(Atom &atom1, Atom &atom2, Atom &atom3) const | BALL::MMFF94StretchBend | |
| calculateSBTIJK(Position angle_type, bool bond_type1, bool bond_type2) | BALL::MMFF94StretchBend | |
| calculateStretchConstant(const Bond &bond, double r0) | BALL::MMFF94StretchBend | |
| calculateStretchR0(const Bond &bond) | BALL::MMFF94StretchBend | |
| clear() | BALL::ScoringComponent | virtual |
| coefficient_ | BALL::ScoringComponent | protected |
| disable() | BALL::ScoringComponent | |
| enable() | BALL::ScoringComponent | |
| energy_ | BALL::ForceFieldComponent | protected |
| force_field_ | BALL::ForceFieldComponent | protected |
| ForceFieldComponent() | BALL::ForceFieldComponent | |
| ForceFieldComponent(ForceField &force_field) | BALL::ForceFieldComponent | |
| ForceFieldComponent(const ForceFieldComponent &force_field_component) | BALL::ForceFieldComponent | |
| getBendEnergy() const | BALL::MMFF94StretchBend | |
| getBends() const | BALL::MMFF94StretchBend | inline |
| getBendType(const Bond &bond1, const Bond &bond2, Atom &atom1, Atom &atom2, Atom &atom3) const | BALL::MMFF94StretchBend | |
| getCoefficient() | BALL::ScoringComponent | |
| getEnergy() const | BALL::ForceFieldComponent | virtual |
| getForceField() const | BALL::ForceFieldComponent | |
| getName() const | BALL::ForceFieldComponent | |
| getNormalizationParameters(double &stddev, double &mean) | BALL::ScoringComponent | |
| getRawScore() const | BALL::ScoringComponent | |
| getScaledScore() const | BALL::ScoringComponent | |
| getScoringFunction() const | BALL::ScoringComponent | |
| getStretchBendEnergy() const | BALL::MMFF94StretchBend | |
| getStretchBends() const | BALL::MMFF94StretchBend | inline |
| getStretchEnergy() const | BALL::MMFF94StretchBend | |
| getStretches() const | BALL::MMFF94StretchBend | inline |
| getTypeName() | BALL::ScoringComponent | |
| gridable_ | BALL::ScoringComponent | protected |
| isAtomPairwise() | BALL::ScoringComponent | |
| isEnabled() const | BALL::ForceFieldComponent | inline |
| BALL::ScoringComponent::isEnabled() | BALL::ScoringComponent | |
| isGridable() | BALL::ScoringComponent | |
| isLigandIntraMolecular() | BALL::ScoringComponent | |
| ligand_intra_molecular_ | BALL::ScoringComponent | protected |
| mean_ | BALL::ScoringComponent | protected |
| MMFF94StretchBend() | BALL::MMFF94StretchBend | |
| MMFF94StretchBend(ForceField &force_field) | BALL::MMFF94StretchBend | |
| MMFF94StretchBend(const MMFF94StretchBend &to_copy) | BALL::MMFF94StretchBend | |
| scaleScore(double score) const | BALL::ScoringComponent | protected |
| score_ | BALL::ScoringComponent | protected |
| scoring_function_ | BALL::ScoringComponent | protected |
| ScoringComponent() | BALL::ScoringComponent | |
| ScoringComponent(const ScoringComponent &sc) | BALL::ScoringComponent | |
| ScoringComponent(ScoringFunction &sf) | BALL::ScoringComponent | |
| selectBaseFunction(String function) | BALL::ScoringComponent | |
| setCoefficient(const double &coeff) | BALL::ScoringComponent | |
| setEnabled(bool state) | BALL::ForceFieldComponent | inline |
| setForceField(ForceField &force_field) | BALL::ForceFieldComponent | |
| setLigandIntraMolecular(bool b) | BALL::ScoringComponent | virtual |
| setName(const String &name) | BALL::ForceFieldComponent | |
| setNormalizationParameters(double stddev, double mean) | BALL::ScoringComponent | |
| setScoringFunction(ScoringFunction &sf) | BALL::ScoringComponent | |
| setup() | BALL::MMFF94StretchBend | virtual |
| setupLigand() | BALL::ScoringComponent | virtual |
| stddev_ | BALL::ScoringComponent | protected |
| type_name_ | BALL::ScoringComponent | protected |
| update() | BALL::ForceFieldComponent | virtual |
| BALL::ScoringComponent::update(const vector< std::pair< Atom *, Atom * > > &pair_vector) | BALL::ScoringComponent | virtual |
| updateBendEnergy() | BALL::MMFF94StretchBend | virtual |
| updateBendForces() | BALL::MMFF94StretchBend | virtual |
| updateEnergy() | BALL::MMFF94StretchBend | virtual |
| updateForces() | BALL::MMFF94StretchBend | virtual |
| updateScore() | BALL::ForceFieldComponent | virtual |
| updateStretchBendEnergy() | BALL::MMFF94StretchBend | virtual |
| updateStretchBendForces() | BALL::MMFF94StretchBend | virtual |
| updateStretchEnergy() | BALL::MMFF94StretchBend | virtual |
| updateStretchForces() | BALL::MMFF94StretchBend | virtual |
| ~ForceFieldComponent() | BALL::ForceFieldComponent | virtual |
| ~MMFF94StretchBend() | BALL::MMFF94StretchBend | virtual |
| ~ScoringComponent() | BALL::ScoringComponent | virtual |
1.8.7