OMSFile.h

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// --------------------------------------------------------------------------
//                   OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2022.
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// $Maintainer: Hendrik Weisser $
// $Authors: Hendrik Weisser $
// --------------------------------------------------------------------------

#pragma once

#include <OpenMS/CONCEPT/ProgressLogger.h>
#include <OpenMS/METADATA/ID/IdentificationData.h>

namespace OpenMS
{
  class FeatureMap;
  class ConsensusMap;

  class OPENMS_DLLAPI OMSFile: public ProgressLogger
  {
  public:
    explicit OMSFile(LogType log_type = LogType::NONE):
      log_type_(log_type)
    {
      setLogType(log_type);
    }

    void store(const String& filename, const IdentificationData& id_data);

    void store(const String& filename, const FeatureMap& features);

    void store(const String& filename, const ConsensusMap& consensus);

    void load(const String& filename, IdentificationData& id_data);

    void load(const String& filename, FeatureMap& features);

    void load(const String& filename, ConsensusMap& consensus);

    void exportToJSON(const String& filename_in, const String& filename_out);

  protected:
    LogType log_type_;
  };
} // namespace OpenMS