FLASHTnTAlgorithm Member List

This is the complete list of members for FLASHTnTAlgorithm, including all inherited members.

areConsistent_(const ProteinHit &a, const ProteinHit &b, double tol) const	FLASHTnTAlgorithm	private
check_defaults_	DefaultParamHandler	protected
CMD enum value	ProgressLogger
current_logger_	ProgressLogger	mutableprotected
decoy_factor_	FLASHTnTAlgorithm	private
DefaultParamHandler(const String &name)	DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)	DefaultParamHandler
DefaultParamHandler()	DefaultParamHandler	private
defaults_	DefaultParamHandler	protected
defaultsToParam_()	DefaultParamHandler	protected
endProgress(UInt64 bytes_processed=0) const	ProgressLogger
error_name_	DefaultParamHandler	protected
extender_param_	FLASHTnTAlgorithm	private
FLASHTnTAlgorithm()	FLASHTnTAlgorithm
FLASHTnTAlgorithm(const FLASHTnTAlgorithm &)	FLASHTnTAlgorithm
FLASHTnTAlgorithm(FLASHTnTAlgorithm &&other)=default	FLASHTnTAlgorithm
getDefaults() const	DefaultParamHandler
getLogType() const	ProgressLogger
getName() const	DefaultParamHandler
getParameters() const	DefaultParamHandler
getProteoformHitsMatchedBy(const FLASHHelperClasses::Tag &tag, std::vector< ProteinHit > &hits) const	FLASHTnTAlgorithm
getProteoforms(std::vector< ProteinHit > &hits) const	FLASHTnTAlgorithm	inline
getSubsections() const	DefaultParamHandler
getTags(std::vector< FLASHHelperClasses::Tag > &tags) const	FLASHTnTAlgorithm
GUI enum value	ProgressLogger
keep_decoy_	FLASHTnTAlgorithm	private
keep_underdetermined_	FLASHTnTAlgorithm	private
last_invoke_	ProgressLogger	mutableprotected
LogType enum name	ProgressLogger
markRepresentativeProteoformHits_(double tol)	FLASHTnTAlgorithm	private
matching_hits_indices_	FLASHTnTAlgorithm	private
multiple_hits_per_spec_	FLASHTnTAlgorithm	private
nextProgress() const	ProgressLogger
NONE enum value	ProgressLogger
operator=(const FLASHTnTAlgorithm &other)	FLASHTnTAlgorithm
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs)	DefaultParamHandler
OpenMS::ProgressLogger::operator=(const ProgressLogger &other)	ProgressLogger
operator==(const DefaultParamHandler &rhs) const	DefaultParamHandler	virtual
param_	DefaultParamHandler	protected
pro_fdr_	FLASHTnTAlgorithm	private
ProgressLogger()	ProgressLogger
ProgressLogger(const ProgressLogger &other)	ProgressLogger
proteoform_hits_	FLASHTnTAlgorithm	private
prsm_fdr_	FLASHTnTAlgorithm	private
recursion_depth_	ProgressLogger	protectedstatic
run(const MSExperiment &map, const std::vector< FASTAFile::FASTAEntry > &fasta_entry)	FLASHTnTAlgorithm
setDefaultParams_()	FLASHTnTAlgorithm	protected
setLogger(ProgressLoggerImpl *logger)	ProgressLogger
setLogType(LogType type) const	ProgressLogger
setName(const String &name)	DefaultParamHandler
setParameters(const Param &param)	DefaultParamHandler
setProgress(SignedSize value) const	ProgressLogger
startProgress(SignedSize begin, SignedSize end, const String &label) const	ProgressLogger
subsections_	DefaultParamHandler	protected
tagger_param_	FLASHTnTAlgorithm	private
tags_	FLASHTnTAlgorithm	private
type_	ProgressLogger	mutableprotected
updateMembers_() override	FLASHTnTAlgorithm	protectedvirtual
warn_empty_defaults_	DefaultParamHandler	protected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="")	DefaultParamHandler	static
~DefaultParamHandler()	DefaultParamHandler	virtual
~FLASHTnTAlgorithm() override=default	FLASHTnTAlgorithm
~ProgressLogger()	ProgressLogger	virtual