ConsensusXMLFile.h

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// $Maintainer: Timo Sachsenberg $
// $Authors: Clemens Groepl, Marc Sturm $
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#pragma once

#include <OpenMS/FORMAT/OPTIONS/PeakFileOptions.h>
#include <OpenMS/FORMAT/XMLFile.h>
#include <OpenMS/KERNEL/ConsensusMap.h>
#include <OpenMS/CONCEPT/ProgressLogger.h>

namespace OpenMS
{
  class ConsensusMap;
  class OPENMS_DLLAPI ConsensusXMLFile :
    public Internal::XMLFile,
    public ProgressLogger
  {
public:
    ConsensusXMLFile();
    ~ConsensusXMLFile() override;

    void load(const String& filename, ConsensusMap& map);

    void store(const String& filename, const ConsensusMap& consensus_map);

    PeakFileOptions& getOptions();

    const PeakFileOptions& getOptions() const;

protected:

    PeakFileOptions options_;
  };
} // namespace OpenMS