ProteaseDB.h

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//                   OpenMS -- Open-Source Mass Spectrometry
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
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// $Maintainer: Xiao Liang $
// $Authors: Xiao Liang, Chris Bielow $
// --------------------------------------------------------------------------

#pragma once

#include <OpenMS/CHEMISTRY/DigestionEnzymeDB.h>
#include <OpenMS/CHEMISTRY/DigestionEnzymeProtein.h>
#include <OpenMS/DATASTRUCTURES/String.h>

#include <vector>

namespace OpenMS
{
  class OPENMS_DLLAPI ProteaseDB: public DigestionEnzymeDB<DigestionEnzymeProtein, ProteaseDB>
  {
    // allow access to constructor in DigestionEnzymeDB::getInstance():
    friend class DigestionEnzymeDB<DigestionEnzymeProtein, ProteaseDB>;

  protected:
    ProteaseDB();

  public:
    void getAllXTandemNames(std::vector<String>& all_names) const;

    void getAllCometNames(std::vector<String>& all_names) const;

    void getAllOMSSANames(std::vector<String>& all_names) const;

    void getAllMSGFNames(std::vector<String>& all_names) const;

    void writeTSV(const String& filename);
  };
}