ProteaseDB Member List

This is the complete list of members for ProteaseDB, including all inherited members.

addEnzyme_(const DigestionEnzymeType *enzyme)	DigestionEnzymeDB< DigestionEnzymeType, InstanceType >	inlineprotected
beginEnzyme() const	DigestionEnzymeDB< DigestionEnzymeType, InstanceType >	inline
const_enzymes_	DigestionEnzymeDB< DigestionEnzymeType, InstanceType >	protected
ConstEnzymeIterator typedef	DigestionEnzymeDB< DigestionEnzymeType, InstanceType >
DigestionEnzymeDB(const String &db_file="")	DigestionEnzymeDB< DigestionEnzymeType, InstanceType >	inlineprotected
DigestionEnzymeDB(const DigestionEnzymeDB &enzymes_db)=delete	DigestionEnzymeDB< DigestionEnzymeType, InstanceType >	protected
DigestionEnzymeDB< DigestionEnzymeProtein, ProteaseDB > class	ProteaseDB	friend
endEnzyme() const	DigestionEnzymeDB< DigestionEnzymeType, InstanceType >	inline
enzyme_names_	DigestionEnzymeDB< DigestionEnzymeType, InstanceType >	protected
enzyme_regex_	DigestionEnzymeDB< DigestionEnzymeType, InstanceType >	protected
EnzymeIterator typedef	DigestionEnzymeDB< DigestionEnzymeType, InstanceType >
getAllCometNames(std::vector< String > &all_names) const	ProteaseDB
getAllMSGFNames(std::vector< String > &all_names) const	ProteaseDB
getAllNames(std::vector< String > &all_names) const	DigestionEnzymeDB< DigestionEnzymeType, InstanceType >	inline
getAllOMSSANames(std::vector< String > &all_names) const	ProteaseDB
getAllXTandemNames(std::vector< String > &all_names) const	ProteaseDB
getEnzyme(const String &name) const	DigestionEnzymeDB< DigestionEnzymeType, InstanceType >	inline
getEnzymeByRegEx(const String &cleavage_regex) const	DigestionEnzymeDB< DigestionEnzymeType, InstanceType >	inline
getInstance()	DigestionEnzymeDB< DigestionEnzymeType, InstanceType >	inlinestatic
hasEnzyme(const String &name) const	DigestionEnzymeDB< DigestionEnzymeType, InstanceType >	inline
hasEnzyme(const DigestionEnzymeType *enzyme) const	DigestionEnzymeDB< DigestionEnzymeType, InstanceType >	inline
hasRegEx(const String &cleavage_regex) const	DigestionEnzymeDB< DigestionEnzymeType, InstanceType >	inline
operator=(const DigestionEnzymeDB &enzymes_db)=delete	DigestionEnzymeDB< DigestionEnzymeType, InstanceType >	protected
parseEnzyme_(std::map< String, String > &values) const	DigestionEnzymeDB< DigestionEnzymeType, InstanceType >	inlineprotected
ProteaseDB()	ProteaseDB	protected
readEnzymesFromFile_(const String &filename)	DigestionEnzymeDB< DigestionEnzymeType, InstanceType >	inlineprotected
writeTSV(const String &filename)	ProteaseDB
~DigestionEnzymeDB()	DigestionEnzymeDB< DigestionEnzymeType, InstanceType >	inlinevirtual