FLASHIdaBridgeFunctions.h

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// --------------------------------------------------------------------------
//                   OpenMS -- Open-Source Mass Spectrometry
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2022.
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// $Maintainer: Kyowon Jeong $
// $Authors: Kyowon Jeong $
// --------------------------------------------------------------------------
 
#pragma once
 
#include <OpenMS/ANALYSIS/TOPDOWN/FLASHDeconvHelperStructs.h>
#include <OpenMS/ANALYSIS/TOPDOWN/FLASHIda.h>
 
namespace OpenMS
{
  extern "C" OPENMS_DLLAPI FLASHIda *CreateFLASHIda(char *arg);
 
  extern "C" OPENMS_DLLAPI void DisposeFLASHIda(FLASHIda *object);
 
  extern "C" OPENMS_DLLAPI int GetPeakGroupSize(FLASHIda *object,
                                                double *mzs,
                                                double *ints,
                                                int length,
                                                double rt_min,
                                                int ms_level,
                                                char *name);
 
  extern "C" OPENMS_DLLAPI void GetIsolationWindows(FLASHIda *object,
                                                    double *wstart,
                                                    double *wend,
                                                    double *qscores,
                                                    int *charges,
                                                    int *min_charges,
                                                    int *max_charges,
                                                    double *mono_masses,
                                                    double *chare_cos,
                                                    double *charge_snrs,
                                                    double *iso_cos,
                                                    double *snrs, double *charge_scores,
                                                    double *ppm_errors,
                                                    double *precursor_intensities,
                                                    double *peakgroup_intensities);
 
  static FLASHDeconvHelperStructs::PrecalculatedAveragine avg;
}