OpenMS  3.0.0
MzMLToMatlab

Make spectrum variable txt for MATLAB from mzml file

The command line parameters of this tool are:

MzMLToMatlab -- Converts spectra in a mzML file into MATLAB variable txt
Full documentation: http://www.openms.de/doxygen/nightly/html/UTILS_MzMLToMatlab.html
Version: 3.0.0-pre-HEAD-2022-08-16 Aug 16 2022, 20:26:27, Revision: 7469d31
To cite OpenMS:
 + Rost HL, Sachsenberg T, Aiche S, Bielow C et al.. OpenMS: a flexible open-source software platform for 
   mass spectrometry data analysis. Nat Meth. 2016; 13, 9: 741-748. doi:10.1038/nmeth.3959.

Usage:
  MzMLToMatlab <options>

Options (mandatory options marked with '*'):
  -in <file>*        Input msalign file
  -log <file>*       Input log file
  -out <file>*       Out msalign file
                     
Common UTIL options:
  -ini <file>        Use the given TOPP INI file
  -threads <n>       Sets the number of threads allowed to be used by the TOPP tool (default: '1')
  -write_ini <file>  Writes the default configuration file
  --help             Shows options
  --helphelp         Shows all options (including advanced)

INI file documentation of this tool:

Legend:
required parameter
advanced parameter
+MzMLToMatlabConverts spectra in a mzML file into MATLAB variable txt
version3.0.0-pre-HEAD-2022-08-16 Version of the tool that generated this parameters file.
++1Instance '1' section for 'MzMLToMatlab'
in Input msalign fileinput file
log Name of log file (created only when specified)
out out msalign fileoutput file
debug0 Sets the debug level
threads1 Sets the number of threads allowed to be used by the TOPP tool
no_progressfalse Disables progress logging to command linetrue,false
forcefalse Overrides tool-specific checkstrue,false
testfalse Enables the test mode (needed for internal use only)true,false