Qvalue.h

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// Copyright (c) 2002-2023, The OpenMS Team -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Kyowon Jeong $
// $Authors: Kyowon Jeong $
// --------------------------------------------------------------------------
 
#pragma once
 
#include <OpenMS/ANALYSIS/TOPDOWN/DeconvolvedSpectrum.h>
#include <OpenMS/ANALYSIS/TOPDOWN/FLASHDeconvHelperStructs.h>
#include <OpenMS/KERNEL/Peak1D.h>
 
namespace OpenMS
{
  class PeakGroup;
 
  class OPENMS_DLLAPI Qvalue
  {
  public:
    typedef FLASHDeconvHelperStructs::LogMzPeak LogMzPeak;
 
    void static updatePeakGroupQvalues(std::vector<DeconvolvedSpectrum>& deconvolved_spectra
                                       // std::vector<DeconvolvedSpectrum>& deconvolved_decoy_spectra,
                                       // bool in_features
    );
 
  private:
    static uint getBinNumber(double qscore, uint total_bin_number);
    static std::vector<double> getDistribution(const std::vector<double>& qscores, uint bin_number);
 
    static std::vector<double> getDistributionWeights(const std::vector<double>& mixed_dist, const std::vector<std::vector<double>>& comp_dists, uint num_iterations = 100);
  };
} // namespace OpenMS