PeakGroup Member List

This is the complete list of members for PeakGroup, including all inherited members.

avg_da_error_	PeakGroup	private
avg_ppm_error_	PeakGroup	private
back()	PeakGroup
begin() const noexcept	PeakGroup
begin() noexcept	PeakGroup
bin_width_DL_	PeakGroup	private
calculateDLMatrices(const MSSpectrum &spec, double tol, const PrecalculatedAveragine &avg)	PeakGroup
charge_decoy enum value	PeakGroup
charge_range_for_DL_	PeakGroup	private
charge_score_	PeakGroup	private
clear_()	PeakGroup	private
dl_matrices_	PeakGroup	private
empty() const	PeakGroup
end() const noexcept	PeakGroup
end() noexcept	PeakGroup
findex_	PeakGroup	private
getAbsChargeRange() const	PeakGroup
getAbsDaError_(const LogMzPeak &p) const	PeakGroup	private
getAbsPPMError_(const LogMzPeak &p) const	PeakGroup	private
getAvgDaError() const	PeakGroup
getAvgPPMError() const	PeakGroup
getBinWidthDL()	PeakGroup	inline
getChargeIntensity(int abs_charge) const	PeakGroup
getChargeIsotopeCosine(int abs_charge) const	PeakGroup
getChargeRangeForDL()	PeakGroup	inline
getChargeScore() const	PeakGroup
getChargeSNR(int abs_charge) const	PeakGroup
getDLMatrix(int index) const	PeakGroup
getFeatureIndex() const	PeakGroup
getIndex() const	PeakGroup
getIntensity() const	PeakGroup
getIsotopeCosine() const	PeakGroup
getIsotopeDaDistance() const	PeakGroup
getIsotopeIntensities() const	PeakGroup
getIsotopeRangeForDL()	PeakGroup	inline
getMinNegativeIsotopeIndex() const	PeakGroup
getMonoMass() const	PeakGroup
getMzRange(int abs_charge) const	PeakGroup
getNoisePeakBegin() const noexcept	PeakGroup
getNoisePeakBegin() noexcept	PeakGroup
getNoisePeakEnd() const noexcept	PeakGroup
getNoisePeakEnd() noexcept	PeakGroup
getNoisePeakPower_(const std::vector< LogMzPeak > &noisy_peaks, const std::vector< LogMzPeak > &signal_peaks, const int z) const	PeakGroup	private
getQscore() const	PeakGroup
getQscore2D() const	PeakGroup
getQvalue(PeakGroup::TargetDecoyType target_decoy_type=PeakGroup::TargetDecoyType::target) const	PeakGroup
getRepAbsCharge() const	PeakGroup
getRepMzRange() const	PeakGroup
getScanNumber() const	PeakGroup
getSNR() const	PeakGroup
getTargetDecoyType() const	PeakGroup
index_	PeakGroup	private
intensity_	PeakGroup	private
is_positive_	PeakGroup	private
is_targeted_	PeakGroup	private
iso_da_distance_	PeakGroup	private
iso_range_for_DL_	PeakGroup	private
isotope_cosine_score_	PeakGroup	private
isotope_decoy enum value	PeakGroup
isPositive() const	PeakGroup
isSignalMZ(double mz, double tol) const	PeakGroup
isTargeted() const	PeakGroup
LogMzPeak typedef	PeakGroup	private
logMzpeaks_	PeakGroup	private
max_abs_charge_	PeakGroup	private
max_snr_abs_charge_	PeakGroup	private
min_abs_charge_	PeakGroup	private
min_negative_isotope_index_	PeakGroup	private
monoisotopic_mass_	PeakGroup	private
negative_iso_peaks_	PeakGroup	private
noise_decoy enum value	PeakGroup
non_specific enum value	PeakGroup
operator<(const PeakGroup &a) const	PeakGroup
operator=(const PeakGroup &t)=default	PeakGroup
operator==(const PeakGroup &a) const	PeakGroup
operator>(const PeakGroup &a) const	PeakGroup
operator[](Size i) const	PeakGroup
PeakGroup()=default	PeakGroup
PeakGroup(int min_abs_charge, int max_abs_charge, bool is_positive)	PeakGroup	explicit
PeakGroup(const PeakGroup &)=default	PeakGroup
PeakGroup(PeakGroup &&other)=default	PeakGroup
per_charge_cos_	PeakGroup	private
per_charge_int_	PeakGroup	private
per_charge_noise_pwr_	PeakGroup	private
per_charge_snr_	PeakGroup	private
per_charge_sum_signal_squared_	PeakGroup	private
per_isotope_int_	PeakGroup	private
PrecalculatedAveragine typedef	PeakGroup	private
push_back(const FLASHDeconvHelperStructs::LogMzPeak &pg)	PeakGroup
qscore2D_	PeakGroup	private
qscore_	PeakGroup	private
qvalue_	PeakGroup	private
recruitAllPeaksInSpectrum(const MSSpectrum &spec, double tol, const FLASHDeconvHelperStructs::PrecalculatedAveragine &avg, double mono_mass)	PeakGroup
reserve(Size n)	PeakGroup
scan_number_	PeakGroup	private
setAbsChargeRange(int min_abs_charge, int max_abs_charge)	PeakGroup
setAvgPPMError(float error)	PeakGroup
setChargeIsotopeCosine(int abs_charge, float cos)	PeakGroup
setChargeScore(float charge_score)	PeakGroup
setChargeSNR(int abs_charge, float c_snr)	PeakGroup
setFeatureIndex(uint findex)	PeakGroup
setIndex(uint i)	PeakGroup
setIsotopeCosine(float cos)	PeakGroup
setIsotopeDaDistance(double d)	PeakGroup
setMonoisotopicMass(double mono_mass)	PeakGroup
setQscore(double qscore)	PeakGroup
setQscore2D(double fqscore)	PeakGroup
setQvalue(double q, PeakGroup::TargetDecoyType target_decoy_type)	PeakGroup
setRepAbsCharge(int max_snr_abs_charge)	PeakGroup
setScanNumber(int scan_number)	PeakGroup
setSNR(float snr)	PeakGroup
setTargetDecoyType(PeakGroup::TargetDecoyType index)	PeakGroup
setTargeted()	PeakGroup
size() const noexcept	PeakGroup
snr_	PeakGroup	private
sort()	PeakGroup
swap(std::vector< FLASHDeconvHelperStructs::LogMzPeak > &x)	PeakGroup
target enum value	PeakGroup
target_decoy_type_	PeakGroup	private
TargetDecoyType enum name	PeakGroup
updateAvgDaError_()	PeakGroup	private
updateAvgPPMError_()	PeakGroup	private
updateChargeFitScoreAndChargeIntensities_(bool is_low_charge)	PeakGroup	private
updateChargeRange_(std::vector< LogMzPeak > &noisy_peaks)	PeakGroup	private
updateMonoMassAndIsotopeIntensities()	PeakGroup
updatePerChargeCos_(const FLASHDeconvHelperStructs::PrecalculatedAveragine &avg)	PeakGroup	private
updatePerChargeInformation_(const std::vector< LogMzPeak > &noisy_peaks)	PeakGroup	private
updateQscore(std::vector< LogMzPeak > &noisy_peaks, const FLASHDeconvHelperStructs::PrecalculatedAveragine &avg, double min_cos, bool is_low_charge, bool is_profile=false, int allowed_iso_error=1)	PeakGroup
updateSNR_()	PeakGroup	private
~PeakGroup()=default	PeakGroup