ElutionModelFitter.h

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// $Maintainer: Hendrik Weisser $
// $Authors: Hendrik Weisser $
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#pragma once

#include <OpenMS/DATASTRUCTURES/DefaultParamHandler.h>
#include <OpenMS/KERNEL/FeatureMap.h>
#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmPickedHelperStructs.h>
#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/TraceFitter.h>

namespace OpenMS
{
  class OPENMS_DLLAPI ElutionModelFitter :
    public DefaultParamHandler
  {

  public:
    ElutionModelFitter();

    ~ElutionModelFitter() override;

    void fitElutionModels(FeatureMap& features);

  protected:
    typedef FeatureFinderAlgorithmPickedHelperStructs::MassTrace MassTrace;
    typedef FeatureFinderAlgorithmPickedHelperStructs::MassTraces MassTraces;

    double calculateFitQuality_(const TraceFitter* fitter, 
                                const MassTraces& traces);

    void fitAndValidateModel_(TraceFitter* fitter, MassTraces& traces,
                              Feature& feature, double region_start,
                              double region_end, bool asymmetric,
                              double area_limit, double check_boundaries);
  };
}