TMTTenPlexQuantitationMethod.h

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//                   OpenMS -- Open-Source Mass Spectrometry
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// $Maintainer: Timo Sachsenberg $
// $Authors: Stephan Aiche $
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#pragma once

#include <OpenMS/config.h>

#include <OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.h>

namespace OpenMS
{
  class OPENMS_DLLAPI TMTTenPlexQuantitationMethod :
    public IsobaricQuantitationMethod
  {
public:
    TMTTenPlexQuantitationMethod();

    ~TMTTenPlexQuantitationMethod() override = default;

    TMTTenPlexQuantitationMethod(const TMTTenPlexQuantitationMethod& other);

    TMTTenPlexQuantitationMethod & operator=(const TMTTenPlexQuantitationMethod& rhs);


    const String& getMethodName() const override;

    const IsobaricChannelList& getChannelInformation() const override;

    Size getNumberOfChannels() const override;

    Matrix<double> getIsotopeCorrectionMatrix() const override;

    Size getReferenceChannel() const override;


  private:
    IsobaricChannelList channels_;

    static const String name_;

    Size reference_channel_;

    static const std::vector<std::string> channel_names_;

  protected:
    void setDefaultParams_();

    void updateMembers_() override;

  };
} // namespace