CVTermList.h

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// --------------------------------------------------------------------------
//                   OpenMS -- Open-Source Mass Spectrometry
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2018.
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//    may be used to endorse or promote products derived from this software
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// $Maintainer: Mathias Walzer $
// $Authors: Andreas Bertsch, Mathias Walzer $
// --------------------------------------------------------------------------

#pragma once

#include <OpenMS/METADATA/CVTerm.h>
#include <OpenMS/METADATA/MetaInfoInterface.h>
#include <OpenMS/DATASTRUCTURES/Map.h>

namespace OpenMS
{
  class OPENMS_DLLAPI CVTermList :
    public MetaInfoInterface
  {
public:

    CVTermList() = default;

    CVTermList(const CVTermList&) = default;

    CVTermList(CVTermList&&) = default;

    virtual ~CVTermList();

    CVTermList& operator=(const CVTermList&) = default;

    CVTermList& operator=(CVTermList&&) & = default;

    void setCVTerms(const std::vector<CVTerm>& terms);

    void replaceCVTerm(const CVTerm& cv_term);

    void replaceCVTerms(const std::vector<CVTerm>& cv_terms, const String& accession);

    void replaceCVTerms(const Map<String, std::vector<CVTerm> >& cv_term_map);

    void consumeCVTerms(const Map<String, std::vector<CVTerm> >& cv_term_map);

    const Map<String, std::vector<CVTerm> >& getCVTerms() const;

    void addCVTerm(const CVTerm& term);

    //bool checkCVTerms(const ControlledVocabulary& cv) const;

    //void correctCVTermNames();

    bool operator==(const CVTermList& cv_term_list) const;

    bool operator!=(const CVTermList& cv_term_list) const;

    bool hasCVTerm(const String& accession) const;

    //bool checkCVTerms(const CVMappingRule & rule, const ControlledVocabulary & cv) const;

    bool empty() const;
    //}

protected:

    Map<String, std::vector<CVTerm> > cv_terms_;

  };

} // namespace OpenMS