FeatureFinderIdentificationAlgorithm.h File Reference

#include <OpenMS/DATASTRUCTURES/DefaultParamHandler.h>
#include <OpenMS/ANALYSIS/SVM/SimpleSVM.h>
#include <OpenMS/ANALYSIS/OPENSWATH/ChromatogramExtractor.h>
#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/ElutionModelFitter.h>
#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmPickedHelperStructs.h>
#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/EGHTraceFitter.h>
#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/GaussTraceFitter.h>
#include <OpenMS/ANALYSIS/TARGETED/TargetedExperiment.h>
#include <OpenMS/KERNEL/MSExperiment.h>
#include <OpenMS/ANALYSIS/MAPMATCHING/TransformationDescription.h>
#include <OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.h>
#include <OpenMS/CONCEPT/ProgressLogger.h>
#include <OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SimpleOpenMSSpectraAccessFactory.h>
#include <vector>
#include <fstream>
#include <map>

Go to the source code of this file.

Classes
class	FeatureFinderIdentificationAlgorithm
struct	FeatureFinderIdentificationAlgorithm::RTRegion
	region in RT in which a peptide elutes: More...
struct	FeatureFinderIdentificationAlgorithm::FeatureFilterQuality
	predicate for filtering features by overall quality: More...
struct	FeatureFinderIdentificationAlgorithm::FeatureFilterPeptides
	predicate for filtering features by assigned peptides: More...
struct	FeatureFinderIdentificationAlgorithm::PeptideCompare
	comparison functor for (unassigned) peptide IDs More...
struct	FeatureFinderIdentificationAlgorithm::FeatureCompare
	comparison functor for features More...

Namespaces
	OpenMS
	Main OpenMS namespace.