IDEvaluationBase.h

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// --------------------------------------------------------------------------
//                   OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2017.
//
// This software is released under a three-clause BSD license:
//  * Redistributions of source code must retain the above copyright
//    notice, this list of conditions and the following disclaimer.
//  * Redistributions in binary form must reproduce the above copyright
//    notice, this list of conditions and the following disclaimer in the
//    documentation and/or other materials provided with the distribution.
//  * Neither the name of any author or any participating institution
//    may be used to endorse or promote products derived from this software
//    without specific prior written permission.
// For a full list of authors, refer to the file AUTHORS.
// --------------------------------------------------------------------------
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// --------------------------------------------------------------------------
// $Maintainer: Chris Bielow $
// $Authors: Chris Bielow $
// --------------------------------------------------------------------------

#pragma once

// OpenMS_GUI config
#include <OpenMS/VISUAL/OpenMS_GUIConfig.h>

//OpenMS
#include <OpenMS/DATASTRUCTURES/DefaultParamHandler.h>
#include <OpenMS/KERNEL/MSExperiment.h>
#include <OpenMS/KERNEL/StandardTypes.h>

//QT
#include <QtWidgets/QMainWindow>
#include <QtWidgets/QMdiArea>
#include <QtWidgets/QButtonGroup>
#include <QtCore/QProcess>
#include <QtWidgets/QSplashScreen>

class QToolBar;
class QListWidget;
class QTextEdit;
class QMdiArea;
class QLabel;
class QWidget;
class QTreeWidget;
class QTreeWidgetItem;
class QWebView;
class QNetworkAccessManager;
class QNetworkReply;

namespace OpenMS
{
  // OpenMS forward declarations
  class TOPPASWidget;
  class TOPPASScene;
  class TOPPASTabBar;
  class TOPPASResources;

  class Spectrum1DWidget;

  class OPENMS_GUI_DLLAPI IDEvaluationBase :
    public QMainWindow,
    public DefaultParamHandler
  {
    Q_OBJECT

public:

    IDEvaluationBase(QWidget * parent = nullptr);
    ~IDEvaluationBase() override;

    QSize sizeHint() const override;

    void setVisibleArea(double low, double high);

    const PeakMap& getPoints() const;

    static StringList getSupportedImageFormats();

public slots:

    void resetZoom();

    void setIntensityMode(int index);

    bool getPoints(std::vector<PeptideIdentification> & peptides /* cannot be const, to avoid copy */, const std::vector<double> & q_value_thresholds, MSSpectrum & points);

    bool loadCurve(const String& file_name, MSSpectrum& points);
    bool addSearchFile(const String & file_name);
    void openFileDialog();
    void saveImageAs();
    bool exportAsImage(const QString & file_name, String & error_message, const QString & format = "");
    //void updateCurrentPath();
    void showAboutDialog();
    void showStatusMessage(std::string msg, OpenMS::UInt time);
    //void showCursorStatus(double x, double y);
    //void closeFile();
    //void updateToolBar();

    bool loadFiles(const StringList & list);

    void showURL();

protected slots:

    //void updateMenu();
    //void showAsWindow_(TOPPASWidget* sw, const String& caption, const int special_id = -1);




protected:

    QTextEdit * log_;
    QTextEdit * desc_;

    QMdiArea * ws_;

    Spectrum1DWidget * spec_1d_;

    QLabel * message_label_;

    TOPPASWidget * window_(int id) const;


    String current_path_;

    void closeEvent(QCloseEvent * event) override;
    void keyPressEvent(QKeyEvent * e) override;

    enum LogState
    {
      LS_NOTICE,             
      LS_WARNING,            
      LS_ERROR               
    };
    void showLogMessage_(LogState state, const String & heading, const String & body);

    std::vector<double> q_value_thresholds_;

    // holds the computed curves for easy export to outside
    PeakMap data_;

    QToolBar * tool_bar_;
    //common intensity modes

    QButtonGroup * intensity_button_group_;
    //1D specific stuff

  }; //class

} //namespace