#include <OpenMS/FORMAT/MzDataFile.h>
#include <OpenMS/FORMAT/IdXMLFile.h>
#include <OpenMS/FORMAT/MascotXMLFile.h>
#include <OpenMS/FORMAT/MascotInfile.h>
#include <OpenMS/FORMAT/PepXMLFileMascot.h>
#include <OpenMS/KERNEL/MSExperiment.h>
#include <OpenMS/FILTERING/ID/IDFilter.h>
#include <OpenMS/APPLICATIONS/TOPPBase.h>
#include <OpenMS/DATASTRUCTURES/StringListUtils.h>
#include <OpenMS/SYSTEM/File.h>
#include <map>
#include <iostream>
#include <fstream>
#include <string>
#include <QtCore/QDir>
#include <QtCore/QFile>
#include <QtCore/QProcess>