ToolDescription.h

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// --------------------------------------------------------------------------
//                   OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2018.
//
// This software is released under a three-clause BSD license:
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//    may be used to endorse or promote products derived from this software
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// $Maintainer: Chris Bielow $
// $Authors: Chris Bielow, Mathias Walzer $
// --------------------------------------------------------------------------

#pragma once

#include <OpenMS/DATASTRUCTURES/Param.h>
#include <OpenMS/DATASTRUCTURES/String.h>

#include <OpenMS/OpenMSConfig.h>

#include <map>

namespace OpenMS
{

  namespace Internal
  {
    struct FileMapping
    {
      String location; // a regex/macro mix; to be expanded by tool;
      String target; // TOPP parameter that determines the desired name
      // thus: move location -> target

      FileMapping& operator=(const FileMapping& rhs);
    };

    struct MappingParam
    {
      std::map<Int, String> mapping;
      std::vector<FileMapping> pre_moves;
      std::vector<FileMapping> post_moves;

      OPENMS_DLLAPI MappingParam& operator=(const MappingParam& rhs);

    };

    struct OPENMS_DLLAPI ToolDescriptionInternal
    {
      bool is_internal;
      String name;
      String category;
      StringList types; // -types of the tool (if any, e.g. ['centroided','wavelet'])

      // default C'Tor
      ToolDescriptionInternal();

      // C'Tor with arguments
      ToolDescriptionInternal(const bool p_is_internal, const String& p_name, const String& p_category, const StringList& p_types);

      // short C'Tor
      ToolDescriptionInternal(const String& p_name, const StringList& p_types);

      ToolDescriptionInternal& operator=(const ToolDescriptionInternal& rhs);

      bool operator==(const ToolDescriptionInternal& rhs) const;

      bool operator<(const ToolDescriptionInternal& rhs) const;
    };

    struct OPENMS_DLLAPI ToolExternalDetails
    {
      String text_startup;
      String text_fail;
      String text_finish;
      String category;
      String commandline;
      String path; 
      String working_directory; 
      MappingParam tr_table;
      Param param;
    };

    struct OPENMS_DLLAPI ToolDescription :
      ToolDescriptionInternal
    {
      // additional details for external tools (one entry for each 'type')
      std::vector<ToolExternalDetails> external_details;

      // default CTor
      ToolDescription();

      // C'Tor for internal TOPP tools
      ToolDescription(const String& p_name, const String& p_category, const StringList& p_types = StringList());

      void addExternalType(const String& type, const ToolExternalDetails& details);

      void append(const ToolDescription& other);

      ToolDescription& operator=(const ToolDescription& rhs);
    };

  } // namespace Internal

} // namespace OPENMS