LayerDataChrom.h

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// --------------------------------------------------------------------------
//                   OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2022.
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// --------------------------------------------------------------------------
// $Maintainer: Chris Bielow $
// $Authors: Chris Bielow $
// --------------------------------------------------------------------------

#pragma once

#include <OpenMS/VISUAL/LayerDataBase.h>

namespace OpenMS
{
  typedef boost::shared_ptr<OSWData> OSWDataSharedPtrType;

  class OPENMS_GUI_DLLAPI LayerDataChrom : public virtual LayerDataBase
  {
  public:
    LayerDataChrom();
    LayerDataChrom(const LayerDataChrom& ld) = default;
    LayerDataChrom& operator=(const LayerDataChrom& ld) = delete;
    LayerDataChrom(LayerDataChrom&& ld) = default;
    LayerDataChrom& operator=(LayerDataChrom&& ld) = default;

    std::unique_ptr<Painter2DBase> getPainter2D() const override;

    std::unique_ptr<LayerData1DBase> to1DLayer() const override;

    std::unique_ptr<LayerStoreData> storeVisibleData(const RangeAllType& visible_range, const DataFilters& layer_filters) const override;

    std::unique_ptr<LayerStoreData> storeFullData() const override;

    ProjectionData getProjection(const DIM_UNIT unit_x, const DIM_UNIT unit_y, const RangeAllType& area) const override;

    PeakIndex findHighestDataPoint(const RangeAllType& area) const override;

    void updateRanges() override
    {
      chromatogram_map_->updateRanges();
    }

    RangeAllType getRange() const override
    {
      RangeAllType r;
      r.assign(*chromatogram_map_);
      return r;
    }

    std::unique_ptr<LayerStatistics> getStats() const override;

    PointXYType peakIndexToXY(const PeakIndex& peak, const DimMapper<2>& mapper) const override;

    String getDataArrayDescription(const PeakIndex& peak_index) override;

    const ExperimentType::ChromatogramType& getChromatogram(Size idx) const
    {
      return chromatogram_map_->getChromatogram(idx);
    }

    
    void setChromData(ExperimentSharedPtrType p)
    {
      chromatogram_map_ = p;
    }

    const ExperimentSharedPtrType& getChromatogramData() const
    {
      return chromatogram_map_;
    }

    ExperimentSharedPtrType& getChromatogramData()
    {
      return chromatogram_map_;
    }

    void setOnDiscPeakData(ODExperimentSharedPtrType p)
    {
      on_disc_peaks_ = p;
    }

    const ODExperimentSharedPtrType& getOnDiscPeakData() const
    {
      return on_disc_peaks_;
    }
    
    OSWDataSharedPtrType& getChromatogramAnnotation()
    {
      return chrom_annotation_;
    }

    const OSWDataSharedPtrType& getChromatogramAnnotation() const
    {
      return chrom_annotation_;
    }

    void setChromatogramAnnotation(OSWData&& data);

  protected:
    ExperimentSharedPtrType chromatogram_map_ = ExperimentSharedPtrType(new ExperimentType());

    ODExperimentSharedPtrType on_disc_peaks_ = ODExperimentSharedPtrType(new OnDiscMSExperiment());

    OSWDataSharedPtrType chrom_annotation_;
  };

} //namespace