LayerDataFeature.h

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// --------------------------------------------------------------------------
//                   OpenMS -- Open-Source Mass Spectrometry
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2022.
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// $Maintainer: Chris Bielow $
// $Authors: Chris Bielow $
// --------------------------------------------------------------------------

#pragma once

#include <OpenMS/VISUAL/LayerDataBase.h>
#include <OpenMS/VISUAL/INTERFACES/IPeptideIds.h>

namespace OpenMS
{

  class OPENMS_GUI_DLLAPI LayerDataFeature : public virtual LayerDataBase, public IPeptideIds
  {
  public:
    LayerDataFeature();
    LayerDataFeature(const LayerDataFeature& ld) = delete;
    LayerDataFeature& operator=(const LayerDataFeature& ld) = delete;
    LayerDataFeature(LayerDataFeature&& ld) = default;
    LayerDataFeature& operator=(LayerDataFeature&& ld) = default;

    std::unique_ptr<Painter2DBase> getPainter2D() const override;

    std::unique_ptr<LayerData1DBase> to1DLayer() const override
    {
      throw Exception::NotImplemented(__FILE__, __LINE__, OPENMS_PRETTY_FUNCTION);
    }


    std::unique_ptr<LayerStoreData> storeVisibleData(const RangeAllType& visible_range, const DataFilters& layer_filters) const override;

    std::unique_ptr<LayerStoreData> storeFullData() const override;

    ProjectionData getProjection(const DIM_UNIT /*unit_x*/, const DIM_UNIT /*unit_y*/, const RangeAllType& /*area*/) const override
    { // currently only a stub
      ProjectionData proj;
      return proj;
    }

    PeakIndex findHighestDataPoint(const RangeAllType& area) const override;

    PointXYType peakIndexToXY(const PeakIndex& peak, const DimMapper<2>& mapper) const override;

    void updateRanges() override
    {
      features_->updateRanges();
    }

    RangeAllType getRange() const override
    {
      RangeAllType r;
      r.assign(*getFeatureMap());
      return r;
    }

    std::unique_ptr<LayerStatistics> getStats() const override;

    bool annotate(const std::vector<PeptideIdentification>& identifications, const std::vector<ProteinIdentification>& protein_identifications) override;

    const PepIds& getPeptideIds() const override
    {
      return getFeatureMap()->getUnassignedPeptideIdentifications();
    }
    PepIds& getPeptideIds() override
    {
      return getFeatureMap()->getUnassignedPeptideIdentifications();
    }

    void setPeptideIds(const PepIds& ids) override
    {
      getFeatureMap()->getUnassignedPeptideIdentifications() = ids;
    }
    void setPeptideIds(PepIds&& ids) override
    {
      getFeatureMap()->getUnassignedPeptideIdentifications() = std::move(ids);
    }

    
    const FeatureMapSharedPtrType& getFeatureMap() const
    {
      return features_;
    }

    FeatureMapSharedPtrType& getFeatureMap()
    {
      return features_;
    }

  protected:
    FeatureMapSharedPtrType features_ = FeatureMapSharedPtrType(new FeatureMapType());
  };

}// namespace OpenMS