OpenMS  3.0.0
LayerDataIonMobility.h
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34 
35 #pragma once
36 
39 
41 
42 namespace OpenMS
43 {
44 
53  class OPENMS_GUI_DLLAPI LayerDataIonMobility : public virtual LayerDataBase
54  {
55  public:
57 
63  LayerDataIonMobility& operator=(const LayerDataIonMobility& ld) = default;
67  LayerDataIonMobility& operator=(LayerDataIonMobility&& ld) = default;
68 
69  std::unique_ptr<Painter2DBase> getPainter2D() const override;
70 
71  std::unique_ptr<LayerData1DBase> to1DLayer() const override;
72 
73  std::unique_ptr<LayerStoreData> storeVisibleData(const RangeAllType& visible_range, const DataFilters& layer_filters) const override;
74 
75  std::unique_ptr<LayerStoreData> storeFullData() const override;
76 
77  ProjectionData getProjection(const DIM_UNIT unit_x, const DIM_UNIT unit_y, const RangeAllType& area) const override;
78 
79  PeakIndex findHighestDataPoint(const RangeAllType& /*area*/) const override
80  { // todo: not implemented
81  return PeakIndex();
82  }
83 
84  void updateRanges() override
85  {
86  single_mobilogram_.updateRanges();
87  // on_disc_peaks->updateRanges(); // note: this is not going to work since its on disk! We currently don't have a good way to access these ranges
88  }
89 
90  RangeAllType getRange() const override
91  {
92  RangeAllType r;
93  r.assign(single_mobilogram_);
94  return r;
95  }
96 
97  // for now, only a single Mobilogram. See class description.
98  void setMobilityData(const Mobilogram& mobilogram)
99  {
100  single_mobilogram_ = mobilogram;
101  }
102 
103  const Mobilogram& getMobilogram(Size index) const
104  {
105  if (index != 0) throw Exception::InvalidValue(__FILE__, __LINE__, OPENMS_PRETTY_FUNCTION, "Only one mobilogram possible atm.", String(index));
106  return single_mobilogram_;
107  }
108 
109  PointXYType peakIndexToXY(const PeakIndex& peak, const DimMapper<2>& mapper) const override;
110 
111  String getDataArrayDescription(const PeakIndex& peak_index) override;
112 
113  std::unique_ptr<LayerStatistics> getStats() const override;
114 
115  protected:
117  };
118 
119 }// namespace OpenMS
A more convenient string class.
Definition: String.h:58
void setMobilityData(const Mobilogram &mobilogram)
Definition: LayerDataIonMobility.h:98
Class that stores the data for one layer of type IonMobility.
Definition: LayerDataIonMobility.h:53
MobilityPeak1D PeakType
Peak type.
Definition: Mobilogram.h:66
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
DIM_UNIT
Definition: CommonEnums.h:45
Result of computing a projection on X and Y axis in a 2D Canvas; see LayerDataBase::getProjection() ...
Definition: LayerDataBase.h:76
auto & assign(const RangeManager< RangeBasesOther... > &rhs)
Definition: RangeManager.h:612
RangeAllType getRange() const override
Definition: LayerDataIonMobility.h:90
Invalid value exception.
Definition: Exception.h:327
size_t Size
Size type e.g. used as variable which can hold result of size()
Definition: Types.h:127
A 1-dimensional raw data mobility point or peak. The unit (ms, 1/K_0, etc) is implicit.
Definition: MobilityPeak1D.h:50
PeakIndex findHighestDataPoint(const RangeAllType &) const override
Find the datapoint with the highest intensity within the given range and return a proxy to that datap...
Definition: LayerDataIonMobility.h:79
Mobilogram single_mobilogram_
a single mobilogram (for now) – see class description
Definition: LayerDataIonMobility.h:116
const Mobilogram & getMobilogram(Size index) const
Definition: LayerDataIonMobility.h:103
DataFilter array providing some convenience functions.
Definition: DataFilters.h:52
void updateRanges() override
Update ranges of the underlying data.
Definition: LayerDataIonMobility.h:84
The representation of a 1D ion mobilogram.
Definition: Mobilogram.h:54
Class that stores the data for one layer.
Definition: LayerDataBase.h:191
Index of a peak or feature.
Definition: PeakIndex.h:50