- w -

• warning() : MzMLHandlerHelper , XMLHandler , XMLValidator
• wasChanged() : TOPPASScene
• weightedTICScore() : XQuestScores
• weightedTICScoreXQuest() : XQuestScores
• Weights() : Weights
• WeightWrapper() : WeightWrapper
• what() : BaseException
• what_() : GlobalExceptionHandler
• wheelEvent() : SpectrumCanvas , TOPPASWidget
• widgetToData() : Spectrum1DCanvas
• widgetToData_() : SpectrumCanvas
• width() : DIntervalBase< D > , Spectrum3DOpenGLCanvas
• window_() : IDEvaluationBase , TOPPASBase , TOPPViewBase
• WindowDistance_() : InclusionExclusionList::WindowDistance_
• WindowMower() : WindowMower
• windowMower_() : CompNovoIdentificationBase
• wrap_() : XQuestResultXMLFile
• wrapSVM() : RTSimulation
• writable() : File
• write() : HiddenMarkovModel , SVOutStream , XTandemInfile
• write_out_parsed_LC_MS() : FTPeakDetectController
• writeAttributeIfExists_() : MzXMLHandler
• writeBinary_() : MzDataHandler
• writeBinaryDataArray() : MzMLHandler
• writeChromatogram_() : CachedmzML , MzMLHandler
• writeChromatograms() : MzMLSqliteHandler
• writeConfiguration_() : TraMLHandler
• writeContainerData() : MzMLHandler
• writeCTD_() : TOPPBase
• writeCV_() : MzMLHandler
• writeCVParams_() : MzQuantMLHandler , TraMLHandler
• writeCVS_() : MzDataHandler
• writeDataProcessing_() : MzMLHandler
• writeDebug_() : PeptideIndexing , TOPPBase
• writeEnd() : FASTAFile
• writeEnzyme_() : MzIdentMLHandler
• writeExperiment() : MzMLSqliteHandler
• writeFeature_() : FeatureXMLFile , MzQuantMLHandler
• writeFeatureDebugInfo_() : FeatureFinderAlgorithmPicked
• writeFooter_() : MzMLHandlerHelper
• writeFragmentAnnotations_() : IdXMLFile , MzIdentMLHandler
• writeGraphMLFile() : HiddenMarkovModel
• writeHeader() : OpenSwathOSWWriter , OpenSwathTSVWriter
• writeHeader_() : MzMLHandler , MascotGenericFile , MascotInfile
• writeHTML() : MetaProSIPReporting
• writeLines() : OpenSwathOSWWriter , OpenSwathTSVWriter
• writeLog_() : PeptideIndexing , TOPPBase
• writeMemdump() : CachedmzML
• writeMetadata() : CachedmzML
• writeMetaInfos_() : MzIdentMLHandler
• writeModifications_() : MascotGenericFile
• writeModParam_() : MzIdentMLHandler
• writeMSExperiment_() : MascotGenericFile , MascotInfile
• writeMzIdentMLFile() : MzIdentMLDOMHandler
• writeNext() : FASTAFile
• writeNote_() : XTandemInfile
• writeOutFeaturesAndChroms_() : OpenSwathWorkflow
• writeParam_() : TOPPASToolVertex
• writeParameterHeader_() : MascotGenericFile , MascotInfile
• writePeakIntensities_() : TOPPMetaProSIP
• writePeptideHeader_() : MzTabFile
• writePeptideIdentification_() : ConsensusXMLFile , FeatureXMLFile
• writePQPOutput_() : TransitionPQPReader
• writePrecursor_() : MzMLHandler
• writeProblem() : LPWrapper
• writeProduct_() : MzMLHandler , TraMLHandler
• writeProteinData_() : MzTabFile
• writeProteinHeader_() : MzTabFile
• writeSoftware_() : MzMLHandler
• writeSourceFile_() : MzMLHandler
• writeSpectra() : MzMLSqliteHandler
• writeSpectrum_() : CachedmzML , MzMLHandler , MascotGenericFile , MascotInfile
• writeStart() : FASTAFile
• writeTarget_() : TraMLHandler
• writeTargets() : InclusionExclusionList
• writeTo() : MzDataHandler , MzIdentMLHandler , MzMLHandler , MzQuantMLHandler , MzXMLHandler , PTMXMLHandler , ToolDescriptionHandler , TraMLHandler , XMLHandler
• writeTo_() : XTandemInfile
• writeToFile() : TOPPASResource
• writeToFile_() : InclusionExclusionList
• writeToLogFile_() : TOPPASScene
• writeTrainingFile_() : SvmTheoreticalSpectrumGeneratorTrainer
• writeTSVOutput_() : TransitionTSVReader
• writeUserParam_() : MzDataHandler , MzMLHandler , MzXMLHandler , TraMLHandler , XMLHandler
• writeUserParams_() : MzQuantMLHandler , TraMLHandler
• writeValueOrNan() : SVOutStream
• writeWhitelistCases_() : FuzzyStringComparator
• writeWSDL_() : TOPPBase
• writeXMLEscape() : XMLHandler
• writeXMLToStream() : ParamXMLFile
• writeXQuestXML() : XQuestResultXMLFile
• writeXQuestXMLSpec() : XQuestResultXMLFile
• writeXvalResults() : SimpleSVM
• WrongParameterType() : WrongParameterType