- d -

• d : RANSACParam
• d_ : CubicSpline2d
• data : BinaryDataArray , MzMLHandler::ChromatogramData , MzMLHandler::SpectrumData
• DATA : LCMSCData
• data : OSBinaryDataArray
• data_ : CalibrationData , DataValue , IDEvaluationBase , MzMLHandler , KDTreeFeatureNode , BilinearInterpolation< Key, Value > , LinearInterpolation< Key, Value > , ProcessData , SimpleSVM , TransformationDescription , TransformationXMLFile
• data_given_ : TransformationModelLinear
• data_length_ : IsotopeWaveletTransform< PeakType >
• data_processing_ : ChromatogramSettings , ConsensusMap , FeatureMap , MzDataHandler , MzXMLHandler , MetaInfoDescription , SpectrumSettings
• data_processings_ : MSQuantifications
• data_to_decode_ : MzDataHandler
• data_to_encode_ : MzDataHandler
• data_type : MzMLHandlerHelper::BinaryData
• database : MzTabPeptideSectionRow , MzTabProteinSectionRow , MzTabPSMSectionRow , MzTabSmallMoleculeSectionRow
• database_ : SequestInfile
• database_name_ : AccurateMassSearchEngine
• database_ref : MzIdentMLDOMHandler::DBSequence
• database_version : MzTabPeptideSectionRow , MzTabProteinSectionRow , MzTabPSMSectionRow , MzTabSmallMoleculeSectionRow
• database_version_ : AccurateMassSearchEngine
• date : MzIdentMLDOMHandler::DatabaseInput
• date_ : MascotXMLHandler , PepXMLFile , ProteinIdentification
• date_time_string_ : MascotXMLHandler
• datetime_ : ExperimentalSettings , ExperimentalSettingsVisualizer
• db : ProteinIdentification::SearchParameters
• db_ : InspectInfile , MascotInfile , ProteinIdentificationVisualizer
• db_map_ : MzIdentMLDOMHandler
• db_mapping_file_ : AccurateMassSearchEngine
• db_mass_ : AccurateMassSearchResult
• db_pos_length_ : InspectOutfile
• db_sq_map_ : MzIdentMLDOMHandler
• db_struct_file_ : AccurateMassSearchEngine
• db_version : ProteinIdentification::SearchParameters
• db_version_ : ProteinIdentificationVisualizer
• dbl_field_ : CachedmzML
• debug_ : FeatureFinderAlgorithmPicked , MapAlignmentAlgorithmSpectrumAlignment , PeptideIndexing
• debug_level_ : TOPPBase
• DEBUG_MASS_END : LCElutionPeak
• DEBUG_MASS_START : LCElutionPeak
• debug_streams_ : LogConfigHandler
• debugmatrix_ : MapAlignmentAlgorithmSpectrumAlignment
• debugscorematrix_ : MapAlignmentAlgorithmSpectrumAlignment
• debugtraceback_ : MapAlignmentAlgorithmSpectrumAlignment
• decoded_char : MzMLHandlerHelper::BinaryData
• decoded_double_list_ : MzDataHandler
• decoded_list_ : MzDataHandler
• decoder_ : Base64 , MzDataHandler , MzMLHandler , MzXMLHandler
• decomp_ : MassDecomposition
• decomp_cache_ : CompNovoIdentificationBase
• decomp_weights_precision_ : CompNovoIdentificationBase
• decomposer_ : RealMassDecomposer , MassDecompositionAlgorithm
• decomposition_map : SIPPeptide
• deconvolution_ : PeakPickerCWT
• decoy : TransitionTSVReader::TSVTransition , LightTransition
• decoy_index_ : ConfidenceScoring
• decoy_string : XQuestResultXMLHandler
• decoy_string_ : PeptideIndexing
• decoy_type_ : ReactionMonitoringTransition
• default_array_length : MzMLHandler::ChromatogramData , MzMLHandler::SpectrumData
• default_array_length_ : MzMLHandler
• default_charge_ : ParentPeakMower
• default_dir_ : ToolsDialog , TOPPASToolConfigDialog
• default_ms_level_ : DTAFile
• default_nterm_mods_ : XTandemXMLFile
• default_parameters_file_ : XTandemInfile
• default_processing_ : MzMLHandler
• default_scan_regexp : SpectrumLookup
• default_value : ParameterInformation
• defaultArrayLength : Chromatogram , Spectrum , OSChromatogram , OSSpectrum
• defaults_ : DefaultParamHandler
• delay_ : AcqusHandler
• delay_in_seconds_ : FileWatcher
• delete_buffer_ : LogStream
• DELTA_CN : MS2Info
• delta_cn_weights_ : SequestOutfile
• delta_mass : MultiplexDeltaMasses::DeltaMass , MultiplexDeltaMassesGenerator::Label
• delta_mass_weights_ : SequestOutfile
• delta_masses_ : MultiplexDeltaMasses
• delta_masses_list_ : MultiplexDeltaMassesGenerator
• denominator_ref_ : ConsensusFeature::Ratio
• desc_ : IDEvaluationBase , TOPPASBase
• description : ControlledVocabulary::CVTerm , FASTAFile::FASTAEntry , ParamXMLHandler , IsobaricQuantitationMethod::IsobaricChannelInformation , ItraqConstants::ChannelInfo , MultiplexDeltaMassesGenerator::Label , MzTabMetaData , MzTabProteinSectionRow , MzTabSampleMetaData , MzTabSmallMoleculeSectionRow , MzTabStudyVariableMetaData , Param::ParamEntry , Param::ParamIterator::TraceInfo , Param::ParamNode , ParameterInformation , PepXMLFile::AminoAcidModification
• description_ : ConsensusFeature::Ratio
• description_text_ : TOPPASScene
• descriptions_ : ParamXMLHandler
• descriptors : SvmTheoreticalSpectrumGenerator::DescriptorSet
• detectableIsotopeFactor_ : SuperHirnParameters
• detecting_transition : TransitionTSVReader::TSVTransition , LightTransition
• detector : MzTabInstrumentMetaData
• dfs_color_ : TOPPASVertex
• dfs_parent_ : TOPPASVertex
• dia_byseries_intensity_min_ : DIAScoring
• dia_byseries_ppm_diff_ : DIAScoring
• dia_centroided_ : DIAScoring , SONARScoring
• dia_extract_window_ : DiaPrescore , DIAScoring , SONARScoring
• dia_nr_charges_ : DIAScoring
• dia_nr_isotopes_ : DIAScoring
• diascoring_ : MRMFeatureFinderScoring
• diff_average_mass_ : ResidueModification
• diff_exponent_ : SimplePairFinder
• diff_formula_ : UnimodXMLHandler , ResidueModification
• diff_intercept_ : SimplePairFinder
• diff_mono_mass_ : ResidueModification
• diff_score : IDDecoyProbability::Transformation_
• digestion_ : IDFilter::DigestionFilter
• digestion_enzyme : ProteinIdentification::SearchParameters
• digestion_time_ : Digestion
• digestionenzyme_ : DigestionVisualizer
• digestionPH_ : DigestionVisualizer
• digestiontemperature_ : DigestionVisualizer
• digestiontime_ : DigestionVisualizer
• dim_ : FeatureXMLFile
• dimension_name_full_ : Peak2D
• dimension_name_short_ : Peak2D
• dimension_unit_full_ : Peak2D
• dimension_unit_short_ : Peak2D
• dimensionsize_ : DistanceMatrix< Value >
• disable_parsing_ : FeatureXMLFile
• disease : MzTabSampleMetaData
• dist_ : HistogramWidget , OptimizePeakDeconvolution , UniqueIdGenerator
• distance : BinaryTreeNode
• distance_ : MinimumDistance
• distance_it_for_cluster_idx_ : GridBasedClustering< Metric >
• distances_ : GridBasedClustering< Metric >
• distribution_ : IsotopeDistribution
• distributions_ : ProductModel< 2 >
• dlg_ : GUIProgressLoggerImpl
• dm_elements_2d_ : TOPPViewBase
• dm_hull_2d_ : TOPPViewBase
• dm_hulls_2d_ : TOPPViewBase
• dm_ident_2d_ : TOPPViewBase
• dm_label_2d_ : TOPPViewBase
• dm_precursors_2d_ : TOPPViewBase
• dm_unassigned_2d_ : TOPPViewBase
• document_id_ : IdXMLFile
• dotprod_score_dia : OpenSwath_Scores
• dou_ : DataValue
• dou_list_ : DataValue
• doublelist : ParamXMLHandler
• doWrite_ : OpenSwathOSWWriter , OpenSwathTSVWriter
• dps_ : MSDataWritingConsumer
• drag_start_pos_ : TOPPASTreeView
• draw_group_1d_ : TOPPViewBase
• draw_modes_ : Spectrum1DCanvas
• drift_time_ : MSSpectrum , Precursor
• dry_run_ : TOPPASScene
• dt_model_file_ : DetectabilitySimulation
• dw_ : AcqusHandler