CVTermList.h

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//                   OpenMS -- Open-Source Mass Spectrometry
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2021.
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// $Maintainer: Mathias Walzer $
// $Authors: Andreas Bertsch, Mathias Walzer $
// --------------------------------------------------------------------------
 
#pragma once
 
#include <OpenMS/METADATA/CVTerm.h>
#include <OpenMS/METADATA/MetaInfoInterface.h>
#include <OpenMS/DATASTRUCTURES/Map.h>
 
namespace OpenMS
{
  class OPENMS_DLLAPI CVTermList :
    public MetaInfoInterface
  {
public:
 
    CVTermList() = default;
 
    CVTermList(const CVTermList&) = default;
 
    // note: we implement the move constructor ourselves due to a bug in MSVS
    // 2015/2017 which cannot produce a default move constructor for classes
    // that contain STL containers (other than vector).
 
    CVTermList(CVTermList&&) noexcept;
 
    virtual ~CVTermList();
 
    CVTermList& operator=(const CVTermList& rhs) & = default;
 
    CVTermList& operator=(CVTermList&&) & = default;
 
    void setCVTerms(const std::vector<CVTerm>& terms);
 
    void replaceCVTerm(const CVTerm& cv_term);
 
    void replaceCVTerms(const std::vector<CVTerm>& cv_terms, const String& accession);
 
    void replaceCVTerms(const Map<String, std::vector<CVTerm> >& cv_term_map);
 
    void consumeCVTerms(const Map<String, std::vector<CVTerm> >& cv_term_map);
 
    const Map<String, std::vector<CVTerm> >& getCVTerms() const;
 
    void addCVTerm(const CVTerm& term);
 
    //bool checkCVTerms(const ControlledVocabulary& cv) const;
 
    //void correctCVTermNames();
 
    bool operator==(const CVTermList& cv_term_list) const;
 
    bool operator!=(const CVTermList& cv_term_list) const;
 
    bool hasCVTerm(const String& accession) const;
 
    //bool checkCVTerms(const CVMappingRule & rule, const ControlledVocabulary & cv) const;
 
    bool empty() const;
    //}
 
protected:
 
    Map<String, std::vector<CVTerm> > cv_terms_;
 
  };
 
} // namespace OpenMS