#include <OpenMS/CONCEPT/Types.h>
#include <OpenMS/DATASTRUCTURES/DefaultParamHandler.h>
#include <cfloat>
#include <map>
#include <vector>

Include dependency graph for DBSuitability.h:

This graph shows which files directly or indirectly include this file:

Classes
class	DBSuitability
	This class holds the functionality of calculating the database suitability. More...

struct	DBSuitability::SuitabilityData
	struct to store results More...

Class Documentation

◆ OpenMS::DBSuitability::SuitabilityData

struct OpenMS::DBSuitability::SuitabilityData

struct to store results

Collaboration diagram for DBSuitability::SuitabilityData:

Class Members
double	cut_off	the cut-off that was used to determine when a score difference was "small enough" this is normalized by mw
Size	num_interest	number of times a deNovo hit scored on top of a database hit
Size	num_re_ranked	number of times a deNovo hit scored on top of a database hit, but their score difference was small enough, that it was still counted as a database hit
Size	num_top_db	number of times the top hit is considered to be a database hit
Size	num_top_novo	number of times the top hit is considered to be a deNovo hit
double	suitability	the suitability of the database used for identification search, calculated with: #db_hits / (#db_hits + #deNovo_hit) can reach from 0 -> the database was not at all suited to 1 -> the perfect database was used Preliminary tests have shown that databases of the right organism or close related organisms score around 0.9 to 0.95, organisms from the same class can still score around 0.8, organisms from the same phylum score around 0.5 to 0.6 and after that it quickly falls to suitabilities of 0.15 or even 0.05. Note that these test were only performed for one mzML and your results might differ.