IsotopeWaveletTransform.h File Reference

#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/IsotopeWaveletConstants.h>
#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/IsotopeWavelet.h>
#include <OpenMS/KERNEL/StandardTypes.h>
#include <OpenMS/KERNEL/FeatureMap.h>
#include <OpenMS/KERNEL/MSExperiment.h>
#include <OpenMS/KERNEL/MSSpectrum.h>
#include <OpenMS/CONCEPT/Exception.h>
#include <OpenMS/MATH/STATISTICS/LinearRegression.h>
#include <OpenMS/DATASTRUCTURES/ConstRefVector.h>
#include <cmath>
#include <boost/math/special_functions/bessel.hpp>
#include <vector>
#include <map>
#include <sstream>
#include <fstream>
#include <iomanip>

Include dependency graph for IsotopeWaveletTransform.h:

Go to the source code of this file.

Classes
class	IsotopeWaveletTransform< PeakType >
	A class implementing the isotope wavelet transform. If you just want to find features using the isotope wavelet, take a look at the FeatureFinderAlgorithmIsotopeWavelet class. Usually, you only have to consider the class at hand if you plan to change the basic implementation of the transform. More...
struct	IsotopeWaveletTransform< PeakType >::BoxElement
	Internally used data structure. More...
class	IsotopeWaveletTransform< PeakType >::TransSpectrum
	Internally (only by GPUs) used data structure . It allows efficient data exchange between CPU and GPU and avoids unnecessary memory moves. The class is tailored on the isotope wavelet transform and is in general not applicable on similar - but different - situations. More...

Namespaces
	OpenMS
	Main OpenMS namespace.

Functions
template<typename PeakType >
bool	intensityComparator (const PeakType &a, const PeakType &b)
template<typename PeakType >
bool	intensityAscendingComparator (const PeakType &a, const PeakType &b)
template<typename PeakType >
bool	intensityPointerComparator (PeakType *a, PeakType *b)
template<typename PeakType >
bool	positionComparator (const PeakType &a, const PeakType &b)

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Class Documentation

OpenMS::IsotopeWaveletTransform::BoxElement

struct OpenMS::IsotopeWaveletTransform::BoxElement

template<typename PeakType>
struct OpenMS::IsotopeWaveletTransform< PeakType >::BoxElement

Internally used data structure.

Collaboration diagram for IsotopeWaveletTransform< PeakType >::BoxElement:

Class Members
UInt	c	Note, this is not the charge (it is charge-1!!!)
double	intens	The transformed intensity at the monoisotopic mass.
double	mz	The monoisotopic position.
UInt	MZ_begin	Index.
UInt	MZ_end	Index.
double	ref_intens
double	RT	The elution time (not the scan index)
UInt	RT_index	The elution time (map) index.
double	score	The associated score.