OpenMS  2.7.0
Classes | Namespaces
Scoring.h File Reference
#include <numeric>
#include <map>
#include <vector>
#include <OpenMS/OPENSWATHALGO/OpenSwathAlgoConfig.h>
#include <boost/lambda/casts.hpp>
#include <boost/lambda/lambda.hpp>
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Classes

struct  XCorrArrayType
 

Namespaces

 OpenSwath
 
 OpenSwath::Scoring
 Scoring functions used by MRMScoring.
 

Typedefs

Type defs and helper structures
typedef std::pair< int, double > XCorrEntry
 Cross Correlation array contains (lag,correlation) pairs. More...
 

Functions

Helper functions
OPENSWATHALGO_DLLAPI double NormalizedManhattanDist (double x[], double y[], int n)
 Calculate the normalized Manhattan distance between two arrays. More...
 
OPENSWATHALGO_DLLAPI double RootMeanSquareDeviation (double x[], double y[], int n)
 Calculate the RMSD (root means square deviation) More...
 
OPENSWATHALGO_DLLAPI double SpectralAngle (double x[], double y[], int n)
 Calculate the Spectral angle (acosine of the normalized dotproduct) More...
 
OPENSWATHALGO_DLLAPI XCorrArrayType calcxcorr_legacy_mquest_ (std::vector< double > &data1, std::vector< double > &data2, bool normalize)
 
OPENSWATHALGO_DLLAPI XCorrArrayType normalizedCrossCorrelation (std::vector< double > &data1, std::vector< double > &data2, const int &maxdelay, const int &lag)
 
OPENSWATHALGO_DLLAPI XCorrArrayType calculateCrossCorrelation (const std::vector< double > &data1, const std::vector< double > &data2, const int &maxdelay, const int &lag)
 Calculate crosscorrelation on std::vector data without normalization. More...
 
OPENSWATHALGO_DLLAPI XCorrArrayType::const_iterator xcorrArrayGetMaxPeak (const XCorrArrayType &array)
 Find best peak in an cross-correlation (highest apex) More...
 
OPENSWATHALGO_DLLAPI void standardize_data (std::vector< double > &data)
 Standardize a vector (subtract mean, divide by standard deviation) More...
 
OPENSWATHALGO_DLLAPI void normalize_sum (double x[], unsigned int n)
 divide each element of x by the sum of the vector More...
 
OPENSWATHALGO_DLLAPI std::vector< unsigned int > computeRank (const std::vector< double > &w)
 
OPENSWATHALGO_DLLAPI double rankedMutualInformation (std::vector< double > &data1, std::vector< double > &data2)