OpenMS  2.7.0
SearchEngineBase.h
Go to the documentation of this file.
1 // --------------------------------------------------------------------------
2 // OpenMS -- Open-Source Mass Spectrometry
3 // --------------------------------------------------------------------------
4 // Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
5 // ETH Zurich, and Freie Universitaet Berlin 2002-2021.
6 //
7 // This software is released under a three-clause BSD license:
8 // * Redistributions of source code must retain the above copyright
9 // notice, this list of conditions and the following disclaimer.
10 // * Redistributions in binary form must reproduce the above copyright
11 // notice, this list of conditions and the following disclaimer in the
12 // documentation and/or other materials provided with the distribution.
13 // * Neither the name of any author or any participating institution
14 // may be used to endorse or promote products derived from this software
15 // without specific prior written permission.
16 // For a full list of authors, refer to the file AUTHORS.
17 // --------------------------------------------------------------------------
18 // THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
19 // AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
20 // IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
21 // ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
22 // INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
23 // EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
24 // PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
25 // OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
26 // WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
27 // OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
28 // ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
29 //
30 // --------------------------------------------------------------------------
31 // $Maintainer: Chris Bielow $
32 // $Authors: Chris Bielow $
33 // --------------------------------------------------------------------------
34 
35 #pragma once
36 
38 
39 
40 namespace OpenMS
41 {
42 
53  class OPENMS_DLLAPI SearchEngineBase : public TOPPBase
54  {
55  public:
57  SearchEngineBase() = delete;
58 
61 
74  SearchEngineBase(const String& name, const String& description, bool official = true, const std::vector<Citation>& citations = {}, bool toolhandler_test = true);
75 
77  virtual ~SearchEngineBase();
78 
93  String getRawfileName(int ms_level = 2) const;
94 
95 
104  String getDBFilename(String db = "") const;
105  }; // end SearchEngineBase
106 
107 } // end NS OpenMS
Base class for Search Engine Adapters.
Definition: SearchEngineBase.h:54
String getRawfileName(int ms_level=2) const
Reads the '-in' argument from internal parameters (usually an mzML file) and checks if MS2 spectra ar...
SearchEngineBase(const SearchEngineBase &)=delete
No default copy constructor.
SearchEngineBase(const String &name, const String &description, bool official=true, const std::vector< Citation > &citations={}, bool toolhandler_test=true)
Constructor.
virtual ~SearchEngineBase()
Destructor.
String getDBFilename(String db="") const
Reads the '-database' argument from internal parameters (or from db) and tries to find the db in sear...
SearchEngineBase()=delete
No default constructor.
A more convenient string class.
Definition: String.h:61
Base class for TOPP applications.
Definition: TOPPBase.h:145
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47